Arvicola amphibius

European water vole


Information

Resource
NCBI Taxonomy Browser NCBI:txid1047088

CC BY 2.0, Peter Trimming (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A152.080 GB
BionanoN/A3.790 GB
Dovetail GenomicsN/A53.501 GB
PacBio SubReadsN/A269.719 GB
No genome size estimate available.
Last upload on 2 February 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 24 July 2020
mArvAmp1.pri.cur.20200724.fasta.gz (667 MB)

Contigs Scaffolds
NG LG Len LG Len
10 12 13.99 Mbp 1 193.96 Mbp
20 31 10.52 Mbp 2 189.60 Mbp
30 56 8.18 Mbp 3 161.33 Mbp
40 88 6.37 Mbp 5 158.92 Mbp
50 126 5.31 Mbp 6 138.66 Mbp
60 174 4.31 Mbp 8 131.41 Mbp
70 235 3.28 Mbp 10 125.09 Mbp
80 317 2.35 Mbp 11 123.99 Mbp
90 443 1.39 Mbp 14 63.16 Mbp
100 1087 819 bp 215 4.31 Kbp
1.000x 1088 2.29 Gbp 216 2.30 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 24 July 2020
mArvAmp1.alt.cur.20200724.fasta.gz (515 MB)

Contigs Scaffolds
NG LG Len LG Len
10 406 0.34 Mbp 405 0.34 Mbp
20 1004 0.26 Mbp 1003 0.26 Mbp
30 1755 0.21 Mbp 1754 0.21 Mbp
40 2662 0.18 Mbp 2661 0.18 Mbp
50 3751 0.15 Mbp 3750 0.15 Mbp
60 5057 0.12 Mbp 5055 0.12 Mbp
70 6641 0.10 Mbp 6638 0.10 Mbp
80 8617 78.79 Kbp 8612 78.87 Kbp
90 11241 55.89 Kbp 11230 56.08 Kbp
100 16472 217 bp 16367 217 bp
1.000x 16473 1.76 Gbp 16368 1.76 Gbp
NG based on each assembly size.
(No genome size estimate available.)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.