Arvicola amphibius
European water vole
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid1047088 |
CC BY 2.0, Peter Trimming (flickr)
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | N/A | 152.080 GB |
Bionano | N/A | 3.790 GB |
Dovetail Genomics | N/A | 53.501 GB |
PacBio SubReads | N/A | 269.719 GB |
No genome size estimate available.
Last upload on 2 February 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Arvicola_amphibius/mArvAmp1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 July 2020
mArvAmp1.pri.cur.20200724.fasta.gz (667 MB)
Version assembly_curated from 24 July 2020
mArvAmp1.pri.cur.20200724.fasta.gz (667 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 12 | 13.99 Mbp | 1 | 193.96 Mbp |
20 | 31 | 10.52 Mbp | 2 | 189.60 Mbp |
30 | 56 | 8.18 Mbp | 3 | 161.33 Mbp |
40 | 88 | 6.37 Mbp | 5 | 158.92 Mbp |
50 | 126 | 5.31 Mbp | 6 | 138.66 Mbp |
60 | 174 | 4.31 Mbp | 8 | 131.41 Mbp |
70 | 235 | 3.28 Mbp | 10 | 125.09 Mbp |
80 | 317 | 2.35 Mbp | 11 | 123.99 Mbp |
90 | 443 | 1.39 Mbp | 14 | 63.16 Mbp |
100 | 1087 | 819 bp | 215 | 4.31 Kbp |
1.000x | 1088 | 2.29 Gbp | 216 | 2.30 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 24 July 2020
mArvAmp1.alt.cur.20200724.fasta.gz (515 MB)
Version assembly_curated from 24 July 2020
mArvAmp1.alt.cur.20200724.fasta.gz (515 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 406 | 0.34 Mbp | 405 | 0.34 Mbp |
20 | 1004 | 0.26 Mbp | 1003 | 0.26 Mbp |
30 | 1755 | 0.21 Mbp | 1754 | 0.21 Mbp |
40 | 2662 | 0.18 Mbp | 2661 | 0.18 Mbp |
50 | 3751 | 0.15 Mbp | 3750 | 0.15 Mbp |
60 | 5057 | 0.12 Mbp | 5055 | 0.12 Mbp |
70 | 6641 | 0.10 Mbp | 6638 | 0.10 Mbp |
80 | 8617 | 78.79 Kbp | 8612 | 78.87 Kbp |
90 | 11241 | 55.89 Kbp | 11230 | 56.08 Kbp |
100 | 16472 | 217 bp | 16367 | 217 bp |
1.000x | 16473 | 1.76 Gbp | 16368 | 1.76 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.