Callithrix jacchus

common marmoset


Information

NCBI Taxonomy Browser
CC BY-SA 2.0 Luciano Marra (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x55.69x91.494 GB
Arima105.81x180.263 GB
Bionano154.52x0.863 GB
Illumina141.54x237.365 GB
PacBio SubReads63.44x378.467 GB
Coverage based on genome size 3.43 Gbp.
Last upload on 28 June 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies


Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mCalJac1.MT.20190820.fasta.gz (5 KB)

Individual 1 Maternal Assembly
Version assembly_curated from 11 December 2019
mCalJac1.mat.cur.20191211.fasta.gz (809 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 23.59 Mbp 1 202.58 Mbp
20 27 17.91 Mbp 3 172.75 Mbp
30 51 11.37 Mbp 5 160.12 Mbp
40 84 8.82 Mbp 7 146.90 Mbp
50 131 6.02 Mbp 10 127.66 Mbp
60 205 3.72 Mbp 13 117.27 Mbp
70 330 1.98 Mbp 16 97.94 Mbp
80 688 0.30 Mbp 21 45.74 Mbp
90 - - - -
100 - - - -
0.816x 1284 2.80 Gbp 216 2.81 Gbp
Individual 1 Paternal Assembly
Version assembly_curated from 11 December 2019
mCalJac1.pat.cur.20191211.fasta.gz (773 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 35.26 Mbp 1 202.81 Mbp
20 18 24.65 Mbp 3 173.41 Mbp
30 34 18.02 Mbp 5 159.67 Mbp
40 55 14.60 Mbp 7 136.97 Mbp
50 85 9.83 Mbp 10 126.10 Mbp
60 131 5.70 Mbp 13 112.97 Mbp
70 220 2.38 Mbp 16 74.70 Mbp
80 - - - -
90 - - - -
100 - - - -
0.780x 1275 2.68 Gbp 463 2.69 Gbp
NG based on genome size 3.43 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.