Danio rerio

zebrafish


Information

Resource
NCBI Taxonomy Browser NCBI:txid29144

CC BY-SA 2.0, Lynn Ketchum (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A158.919 GB
BionanoN/A0.088 GB
Dovetail GenomicsN/A79.097 GB
IlluminaN/A201.240 GB
PacBio SubReadsN/A451.666 GB
No genome size estimate available.
Last upload on 25 August 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fDreSAT1.MT.20191002.fasta.gz (5 KB)

Individual 1 Maternal Assembly
Version assembly_curated from 22 May 2020
fDreSAT1.mat.cur.20200522.fasta.gz (387 MB)

Contigs Scaffolds
NG LG Len LG Len
10 9 12.11 Mbp 1 72.59 Mbp
20 22 8.09 Mbp 4 59.97 Mbp
30 42 5.79 Mbp 6 59.35 Mbp
40 68 4.64 Mbp 8 55.94 Mbp
50 102 3.59 Mbp 11 54.39 Mbp
60 143 2.91 Mbp 13 53.21 Mbp
70 198 2.10 Mbp 16 49.38 Mbp
80 278 1.39 Mbp 19 45.93 Mbp
90 425 0.55 Mbp 22 38.89 Mbp
100 2105 1.02 Kbp 753 1.02 Kbp
1.000x 2106 1.36 Gbp 754 1.36 Gbp
Individual 1 Paternal Assembly
Version assembly_curated from 22 May 2020
fDreSAT1.pat.cur.20200522.fasta.gz (385 MB)

Contigs Scaffolds
NG LG Len LG Len
10 7 14.25 Mbp 1 62.61 Mbp
20 20 8.71 Mbp 4 57.66 Mbp
30 37 7.18 Mbp 6 56.54 Mbp
40 58 6.01 Mbp 9 54.75 Mbp
50 84 4.53 Mbp 11 52.96 Mbp
60 118 3.51 Mbp 14 50.01 Mbp
70 163 2.58 Mbp 16 49.74 Mbp
80 225 1.74 Mbp 19 46.41 Mbp
90 344 0.71 Mbp 22 39.02 Mbp
100 1963 1.02 Kbp 1251 1.02 Kbp
1.000x 1964 1.35 Gbp 1252 1.35 Gbp
NG based on each assembly size.
(No genome size estimate available.)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.