Falco naumanni

lesser kestrel


Information

Resource
NCBI Taxonomy Browser NCBI:txid148594

Copyright Michele Mendi, used with permission

Raw Data

Datatype Approximate Coverage Download Size
10x65.71x44.819 GB
Arima54.72x40.446 GB
Bionano335.35x0.859 GB
Illumina258.46x169.136 GB
PacBio SubReads104.34x254.242 GB
Coverage based on genome size 1.35 Gbp.
Last upload on 23 January 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 18 August 2020
bFalNau1.pri.cur.20200818.fasta.gz (354 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 54.07 Mbp 1 123.27 Mbp
20 6 23.92 Mbp 2 121.31 Mbp
30 12 20.49 Mbp 3 113.49 Mbp
40 19 16.20 Mbp 4 92.80 Mbp
50 29 12.38 Mbp 6 86.60 Mbp
60 41 9.70 Mbp 7 72.77 Mbp
70 59 5.90 Mbp 9 53.80 Mbp
80 90 3.09 Mbp 13 30.44 Mbp
90 - - 221 22.28 Kbp
100 - - - -
0.897x 588 1.21 Gbp 290 1.22 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 18 August 2020
bFalNau1.alt.cur.20200818.fasta.gz (11 KB)

Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
10116 A 0.2783 bp A 0.2783 bp
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
bFalNau1.MT.20191204.fasta.gz (5 KB)
Individual 1 Maternal Assembly
Version assembly_curated from 14 July 2020
bFalNau1.mat.decon.20200714.fasta.gz (335 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 31.76 Mbp 1 112.42 Mbp
20 7 26.57 Mbp 2 87.23 Mbp
30 14 20.73 Mbp 4 73.02 Mbp
40 21 16.51 Mbp 6 65.16 Mbp
50 31 11.50 Mbp 8 55.90 Mbp
60 46 7.95 Mbp 11 35.70 Mbp
70 67 5.21 Mbp 15 24.35 Mbp
80 111 1.27 Mbp 26 6.08 Mbp
90 - - - -
100 - - - -
0.848x 809 1.14 Gbp 551 1.16 Gbp
Individual 1 Paternal Assembly
Version assembly_curated from 14 July 2020
bFalNau1.pat.decon.20200714.fasta.gz (348 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 54.07 Mbp 1 121.25 Mbp
20 6 23.92 Mbp 2 112.11 Mbp
30 12 20.49 Mbp 3 87.93 Mbp
40 19 16.20 Mbp 5 74.68 Mbp
50 29 12.46 Mbp 7 68.61 Mbp
60 41 9.70 Mbp 9 52.54 Mbp
70 58 6.22 Mbp 12 33.98 Mbp
80 90 2.70 Mbp 17 19.50 Mbp
90 - - - -
100 - - - -
0.880x 723 1.19 Gbp 491 1.20 Gbp
NG based on genome size 1.35 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.