Falco naumanni
lesser kestrel
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid148594 |
Copyright Michele Mendi, used with permission
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | 65.71x | 44.819 GB |
Arima | 54.72x | 40.446 GB |
Bionano | 335.35x | 0.859 GB |
Illumina | 258.46x | 169.136 GB |
PacBio SubReads | 104.34x | 254.242 GB |
Coverage based on genome size 1.35 Gbp.
Last upload on 23 January 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Falco_naumanni/bFalNau1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 18 August 2020
bFalNau1.pri.cur.20200818.fasta.gz (354 MB)
Version assembly_curated from 18 August 2020
bFalNau1.pri.cur.20200818.fasta.gz (354 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 54.07 Mbp | 1 | 123.27 Mbp |
20 | 6 | 23.92 Mbp | 2 | 121.31 Mbp |
30 | 12 | 20.49 Mbp | 3 | 113.49 Mbp |
40 | 19 | 16.20 Mbp | 4 | 92.80 Mbp |
50 | 29 | 12.38 Mbp | 6 | 86.60 Mbp |
60 | 41 | 9.70 Mbp | 7 | 72.77 Mbp |
70 | 59 | 5.90 Mbp | 9 | 53.80 Mbp |
80 | 90 | 3.09 Mbp | 13 | 30.44 Mbp |
90 | - | - | 221 | 22.28 Kbp |
100 | - | - | - | - |
0.897x | 588 | 1.21 Gbp | 290 | 1.22 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 18 August 2020
bFalNau1.alt.cur.20200818.fasta.gz (11 KB)
Version assembly_curated from 18 August 2020
bFalNau1.alt.cur.20200818.fasta.gz (11 KB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | - | - | - | - |
20 | - | - | - | - |
30 | - | - | - | - |
40 | - | - | - | - |
50 | - | - | - | - |
60 | - | - | - | - |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
10116 | A | 0.2783 bp | A | 0.2783 bp |
NG based on genome size 1.35 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 December 2019
bFalNau1.MT.20191204.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 December 2019
bFalNau1.MT.20191204.fasta.gz (5 KB)
Individual 1 Maternal Assembly
Version assembly_curated from 14 July 2020
bFalNau1.mat.decon.20200714.fasta.gz (335 MB)
Version assembly_curated from 14 July 2020
bFalNau1.mat.decon.20200714.fasta.gz (335 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 3 | 31.76 Mbp | 1 | 112.42 Mbp |
20 | 7 | 26.57 Mbp | 2 | 87.23 Mbp |
30 | 14 | 20.73 Mbp | 4 | 73.02 Mbp |
40 | 21 | 16.51 Mbp | 6 | 65.16 Mbp |
50 | 31 | 11.50 Mbp | 8 | 55.90 Mbp |
60 | 46 | 7.95 Mbp | 11 | 35.70 Mbp |
70 | 67 | 5.21 Mbp | 15 | 24.35 Mbp |
80 | 111 | 1.27 Mbp | 26 | 6.08 Mbp |
90 | - | - | - | - |
100 | - | - | - | - |
0.848x | 809 | 1.14 Gbp | 551 | 1.16 Gbp |
Individual 1 Paternal Assembly
Version assembly_curated from 14 July 2020
bFalNau1.pat.decon.20200714.fasta.gz (348 MB)
Version assembly_curated from 14 July 2020
bFalNau1.pat.decon.20200714.fasta.gz (348 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 54.07 Mbp | 1 | 121.25 Mbp |
20 | 6 | 23.92 Mbp | 2 | 112.11 Mbp |
30 | 12 | 20.49 Mbp | 3 | 87.93 Mbp |
40 | 19 | 16.20 Mbp | 5 | 74.68 Mbp |
50 | 29 | 12.46 Mbp | 7 | 68.61 Mbp |
60 | 41 | 9.70 Mbp | 9 | 52.54 Mbp |
70 | 58 | 6.22 Mbp | 12 | 33.98 Mbp |
80 | 90 | 2.70 Mbp | 17 | 19.50 Mbp |
90 | - | - | - | - |
100 | - | - | - | - |
0.880x | 723 | 1.19 Gbp | 491 | 1.20 Gbp |
NG based on genome size 1.35 Gbp.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.