Hirundo rustica

barn swallow


Information

Resource
NCBI Taxonomy Browser NCBI:txid43150

CC BY-SA 2.0 Mike Pennington (geograph)

Raw Data

Datatype Approximate Coverage Download Size
10x82.58x55.843 GB
Arima63.03x46.927 GB
Bionano0.00x0.017 GB
PacBio SubReads51.15x117.976 GB
Coverage based on genome size 1.31 Gbp.
Last upload on 22 February 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 11 February 2020
bHirRus1.pri.cur.20200211.fasta.gz (314 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 8.90 Mbp 0 156.04 Mbp
20 28 6.24 Mbp 1 119.02 Mbp
30 55 4.02 Mbp 3 90.13 Mbp
40 94 2.89 Mbp 4 76.19 Mbp
50 147 2.02 Mbp 6 63.26 Mbp
60 228 1.29 Mbp 9 31.70 Mbp
70 375 0.61 Mbp 14 20.27 Mbp
80 814 0.11 Mbp 25 6.84 Mbp
90 - - - -
100 - - - -
0.823x 1677 1.08 Gbp 578 1.10 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 11 February 2020
bHirRus1.alt.cur.20200211.fasta.gz (275 MB)

Contigs Scaffolds
NG LG Len LG Len
10 34 2.84 Mbp 34 2.84 Mbp
20 93 1.78 Mbp 93 1.78 Mbp
30 183 1.19 Mbp 183 1.19 Mbp
40 312 0.84 Mbp 312 0.84 Mbp
50 507 0.54 Mbp 507 0.54 Mbp
60 838 0.28 Mbp 838 0.28 Mbp
70 1847 52.74 Kbp 1846 52.90 Kbp
80 - - - -
90 - - - -
100 - - - -
0.715x 2484 0.94 Gbp 2478 0.94 Gbp
NG based on genome size 1.31 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.