Hirundo rustica
barn swallow
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid43150 |
CC BY-SA 2.0 Mike Pennington (geograph)
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | 82.58x | 55.843 GB |
Arima | 63.03x | 46.927 GB |
Bionano | 0.00x | 0.017 GB |
PacBio SubReads | 51.15x | 117.976 GB |
Coverage based on genome size 1.31 Gbp.
Last upload on 22 February 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Hirundo_rustica/bHirRus1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 February 2020
bHirRus1.pri.cur.20200211.fasta.gz (314 MB)
Version assembly_curated from 11 February 2020
bHirRus1.pri.cur.20200211.fasta.gz (314 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 10 | 8.90 Mbp | 0 | 156.04 Mbp |
20 | 28 | 6.24 Mbp | 1 | 119.02 Mbp |
30 | 55 | 4.02 Mbp | 3 | 90.13 Mbp |
40 | 94 | 2.89 Mbp | 4 | 76.19 Mbp |
50 | 147 | 2.02 Mbp | 6 | 63.26 Mbp |
60 | 228 | 1.29 Mbp | 9 | 31.70 Mbp |
70 | 375 | 0.61 Mbp | 14 | 20.27 Mbp |
80 | 814 | 0.11 Mbp | 25 | 6.84 Mbp |
90 | - | - | - | - |
100 | - | - | - | - |
0.823x | 1677 | 1.08 Gbp | 578 | 1.10 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 15 October 2020
bHirRus1.alt.cur.20201015.fasta.gz (275 MB)
Version assembly_curated from 15 October 2020
bHirRus1.alt.cur.20201015.fasta.gz (275 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 34 | 2.84 Mbp | 34 | 2.84 Mbp |
20 | 93 | 1.78 Mbp | 93 | 1.78 Mbp |
30 | 183 | 1.19 Mbp | 183 | 1.19 Mbp |
40 | 312 | 0.84 Mbp | 312 | 0.84 Mbp |
50 | 507 | 0.54 Mbp | 507 | 0.54 Mbp |
60 | 838 | 0.28 Mbp | 838 | 0.28 Mbp |
70 | 1847 | 52.74 Kbp | 1846 | 52.90 Kbp |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.715x | 2483 | 0.94 Gbp | 2477 | 0.94 Gbp |
NG based on genome size 1.31 Gbp.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.