Petromyzon marinus

sea lamprey


Information

Resource
NCBI Taxonomy Browser NCBI:txid7757

Resource Primary Assembly Alternate Assembly
GenBank GCA_010993605.1 GCA_010993595.1
ENA GCA_010993605.1 GCA_010993595.1
UCSC Genome Browser GCA_010993605.1 GCA_010993595.1

CC BY-SA 2.0 T. Lawrence (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x67.01x50.509 GB
Arima71.23x56.763 GB
Bionano538.18x0.838 GB
PacBio SubReads62.36x159.414 GB
Coverage based on genome size 1.50 Gbp.
Last upload on 18 April 2020.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 9 December 2019
kPetMar1.pri.cur.20191209.fasta.gz (283 MB)

Contigs Scaffolds
NG LG Len LG Len
10 14 8.75 Mbp 6 16.78 Mbp
20 37 5.41 Mbp 15 15.30 Mbp
30 71 3.52 Mbp 25 13.66 Mbp
40 128 2.07 Mbp 37 12.49 Mbp
50 236 0.97 Mbp 50 10.96 Mbp
60 488 0.37 Mbp 67 5.88 Mbp
70 1459 56.12 Kbp 465 0.12 Mbp
80 - - - -
90 - - - -
100 - - - -
0.716x 2363 1.07 Gbp 1434 1.09 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 9 December 2019
kPetMar1.alt.cur.20191209.fasta.gz (228 MB)

Contigs Scaffolds
NG LG Len LG Len
10 127 0.86 Mbp 127 0.86 Mbp
20 351 0.54 Mbp 351 0.54 Mbp
30 688 0.37 Mbp 687 0.37 Mbp
40 1215 0.22 Mbp 1212 0.22 Mbp
50 2262 94.77 Kbp 2254 95.25 Kbp
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.561x 4075 0.84 Gbp 4064 0.84 Gbp
NG based on genome size 1.50 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 19 April 2020
kPetMar1.MT.20200419.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.