Rana temporaria

common frog


Information

Resource
NCBI Taxonomy Browser NCBI:txid8407

CC BY-NC 2.0 abejorro34 (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A250.988 GB
BionanoN/A2.186 GB
Dovetail GenomicsN/A222.656 GB
PacBio SubReadsN/A579.652 GB
No genome size estimate available.
Last upload on 8 January 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 24 April 2020
aRanTem1.pri.cur.20200424.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 19 15.72 Mbp 0 0.69 Gbp
20 49 11.71 Mbp 1 0.54 Gbp
30 88 9.46 Mbp 2 495.42 Mbp
40 136 7.56 Mbp 2 495.42 Mbp
50 196 6.26 Mbp 3 481.76 Mbp
60 273 4.43 Mbp 4 429.35 Mbp
70 380 3.28 Mbp 6 212.59 Mbp
80 534 2.15 Mbp 8 184.30 Mbp
90 791 1.14 Mbp 10 153.78 Mbp
100 2413 100 bp 553 563 bp
1.000x 2414 4.09 Gbp 554 4.11 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 24 April 2020
aRanTem1.alt.cur.20200424.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 184 1.52 Mbp 184 1.52 Mbp
20 475 1.09 Mbp 475 1.09 Mbp
30 863 0.85 Mbp 863 0.85 Mbp
40 1350 0.68 Mbp 1350 0.68 Mbp
50 1960 0.55 Mbp 1959 0.55 Mbp
60 2702 0.45 Mbp 2701 0.45 Mbp
70 3625 0.35 Mbp 3624 0.35 Mbp
80 4851 0.25 Mbp 4849 0.25 Mbp
90 6815 0.14 Mbp 6811 0.14 Mbp
100 12033 287 bp 12019 287 bp
1.000x 12034 3.69 Gbp 12020 3.69 Gbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
aRanTem1.MT.20191003.fasta.gz (6 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.