Rana temporaria
common frog
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid8407 |
CC BY-NC 2.0 abejorro34 (flickr)
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | N/A | 250.988 GB |
Bionano | N/A | 2.186 GB |
Dovetail Genomics | N/A | 222.656 GB |
PacBio SubReads | N/A | 579.652 GB |
No genome size estimate available.
Last upload on 8 January 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Rana_temporaria/aRanTem1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 April 2020
aRanTem1.pri.cur.20200424.fasta.gz (1 GB)
Version assembly_curated from 24 April 2020
aRanTem1.pri.cur.20200424.fasta.gz (1 GB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 19 | 15.72 Mbp | 0 | 0.69 Gbp |
20 | 49 | 11.71 Mbp | 1 | 0.54 Gbp |
30 | 88 | 9.46 Mbp | 2 | 495.42 Mbp |
40 | 136 | 7.56 Mbp | 2 | 495.42 Mbp |
50 | 196 | 6.26 Mbp | 3 | 481.76 Mbp |
60 | 273 | 4.43 Mbp | 4 | 429.35 Mbp |
70 | 380 | 3.28 Mbp | 6 | 212.59 Mbp |
80 | 534 | 2.15 Mbp | 8 | 184.30 Mbp |
90 | 791 | 1.14 Mbp | 10 | 153.78 Mbp |
100 | 2413 | 100 bp | 553 | 563 bp |
1.000x | 2414 | 4.09 Gbp | 554 | 4.11 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 24 April 2020
aRanTem1.alt.cur.20200424.fasta.gz (1 GB)
Version assembly_curated from 24 April 2020
aRanTem1.alt.cur.20200424.fasta.gz (1 GB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 184 | 1.52 Mbp | 184 | 1.52 Mbp |
20 | 475 | 1.09 Mbp | 475 | 1.09 Mbp |
30 | 863 | 0.85 Mbp | 863 | 0.85 Mbp |
40 | 1350 | 0.68 Mbp | 1350 | 0.68 Mbp |
50 | 1960 | 0.55 Mbp | 1959 | 0.55 Mbp |
60 | 2702 | 0.45 Mbp | 2701 | 0.45 Mbp |
70 | 3625 | 0.35 Mbp | 3624 | 0.35 Mbp |
80 | 4851 | 0.25 Mbp | 4849 | 0.25 Mbp |
90 | 6815 | 0.14 Mbp | 6811 | 0.14 Mbp |
100 | 12033 | 287 bp | 12019 | 287 bp |
1.000x | 12034 | 3.69 Gbp | 12020 | 3.69 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
aRanTem1.MT.20191003.fasta.gz (6 KB)
Version assembly_MT_rockefeller from 3 October 2019
aRanTem1.MT.20191003.fasta.gz (6 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.