Sciurus carolinensis

grey squirrel


Information

NCBI Taxonomy Browser
CC BY 2.0, Judy Gallagher (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A167.150 GB
Dovetail GenomicsN/A237.270 GB
PacBio SubReadsN/A382.059 GB
No genome size estimate available.
Last upload on 8 August 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies


Individual 1 Primary Assembly
Version assembly_curated from 14 November 2019
mSciCar1.pri.cur.20191114.fasta.gz (819 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 44.40 Mbp 1 199.83 Mbp
20 12 35.14 Mbp 2 183.55 Mbp
30 22 25.19 Mbp 4 175.91 Mbp
40 34 20.21 Mbp 6 154.99 Mbp
50 51 13.98 Mbp 7 148.23 Mbp
60 74 10.81 Mbp 9 140.98 Mbp
70 106 6.73 Mbp 12 118.65 Mbp
80 170 2.83 Mbp 14 88.65 Mbp
90 423 0.48 Mbp 19 30.99 Mbp
100 2575 3.80 Kbp 751 10.39 Kbp
1.000x 2576 2.81 Gbp 752 2.82 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 14 November 2019
mSciCar1.alt.cur.20191114.fasta.gz (599 MB)

Contigs Scaffolds
NG LG Len LG Len
10 100 1.58 Mbp 100 1.58 Mbp
20 253 1.15 Mbp 253 1.15 Mbp
30 455 0.88 Mbp 455 0.88 Mbp
40 725 0.66 Mbp 725 0.66 Mbp
50 1081 0.49 Mbp 1081 0.49 Mbp
60 1579 0.35 Mbp 1579 0.35 Mbp
70 2328 0.22 Mbp 2328 0.22 Mbp
80 3509 0.14 Mbp 3508 0.14 Mbp
90 5377 85.88 Kbp 5376 85.91 Kbp
100 9509 1.04 Kbp 9507 1.04 Kbp
1.000x 9510 2.06 Gbp 9508 2.06 Gbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
mSciCar1.MT.20191216.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.