Scyliorhinus canicula

lesser-spotted catshark


Information

Resource
NCBI Taxonomy Browser NCBI:txid7830

CC BY-SA 4.0 Hans Hillewaert (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A295.832 GB
BionanoN/A1.817 GB
PacBio SubReadsN/A588.060 GB
No genome size estimate available.
Last upload on 17 December 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Scyliorhinus_canicula/sScyCan1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scyliorhinus_canicula/sScyCan1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scyliorhinus_canicula/sScyCan1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 16 December 2019
sScyCan1.pri.cur.20191216.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 53 5.68 Mbp 1 289.50 Mbp
20 144 3.89 Mbp 2 277.25 Mbp
30 263 3.10 Mbp 4 233.86 Mbp
40 417 2.39 Mbp 6 211.67 Mbp
50 615 1.86 Mbp 8 198.79 Mbp
60 875 1.38 Mbp 10 169.80 Mbp
70 1239 0.95 Mbp 13 160.85 Mbp
80 1804 0.57 Mbp 16 133.84 Mbp
90 2880 0.25 Mbp 19 98.27 Mbp
100 7790 31 bp 644 995 bp
1.000x 7791 4.16 Gbp 645 4.22 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 16 December 2019
sScyCan1.alt.cur.20191216.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 540 0.55 Mbp 540 0.55 Mbp
20 1337 0.44 Mbp 1337 0.44 Mbp
30 2336 0.35 Mbp 2336 0.35 Mbp
40 3578 0.28 Mbp 3578 0.28 Mbp
50 5101 0.23 Mbp 5101 0.23 Mbp
60 6967 0.19 Mbp 6967 0.19 Mbp
70 9313 0.15 Mbp 9313 0.15 Mbp
80 12349 0.11 Mbp 12349 0.11 Mbp
90 16635 71.73 Kbp 16635 71.73 Kbp
100 26656 115 bp 26650 115 bp
1.000x 26657 3.87 Gbp 26651 3.87 Gbp
NG based on each assembly size.
(No genome size estimate available.)

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