Scyliorhinus canicula
lesser-spotted catshark
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid7830 |
CC BY-SA 4.0 Hans Hillewaert (wikimedia)
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | N/A | 295.832 GB |
Bionano | N/A | 1.817 GB |
PacBio SubReads | N/A | 588.060 GB |
No genome size estimate available.
Last upload on 17 December 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Scyliorhinus_canicula/sScyCan1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scyliorhinus_canicula/sScyCan1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scyliorhinus_canicula/sScyCan1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Scyliorhinus_canicula/sScyCan1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Scyliorhinus_canicula/sScyCan1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 December 2019
sScyCan1.pri.cur.20191216.fasta.gz (1 GB)
Version assembly_curated from 16 December 2019
sScyCan1.pri.cur.20191216.fasta.gz (1 GB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 53 | 5.68 Mbp | 1 | 289.50 Mbp |
20 | 144 | 3.89 Mbp | 2 | 277.25 Mbp |
30 | 263 | 3.10 Mbp | 4 | 233.86 Mbp |
40 | 417 | 2.39 Mbp | 6 | 211.67 Mbp |
50 | 615 | 1.86 Mbp | 8 | 198.79 Mbp |
60 | 875 | 1.38 Mbp | 10 | 169.80 Mbp |
70 | 1239 | 0.95 Mbp | 13 | 160.85 Mbp |
80 | 1804 | 0.57 Mbp | 16 | 133.84 Mbp |
90 | 2880 | 0.25 Mbp | 19 | 98.27 Mbp |
100 | 7790 | 31 bp | 644 | 995 bp |
1.000x | 7791 | 4.16 Gbp | 645 | 4.22 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 16 December 2019
sScyCan1.alt.cur.20191216.fasta.gz (1 GB)
Version assembly_curated from 16 December 2019
sScyCan1.alt.cur.20191216.fasta.gz (1 GB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 540 | 0.55 Mbp | 540 | 0.55 Mbp |
20 | 1337 | 0.44 Mbp | 1337 | 0.44 Mbp |
30 | 2336 | 0.35 Mbp | 2336 | 0.35 Mbp |
40 | 3578 | 0.28 Mbp | 3578 | 0.28 Mbp |
50 | 5101 | 0.23 Mbp | 5101 | 0.23 Mbp |
60 | 6967 | 0.19 Mbp | 6967 | 0.19 Mbp |
70 | 9313 | 0.15 Mbp | 9313 | 0.15 Mbp |
80 | 12349 | 0.11 Mbp | 12349 | 0.11 Mbp |
90 | 16635 | 71.73 Kbp | 16635 | 71.73 Kbp |
100 | 26656 | 115 bp | 26650 | 115 bp |
1.000x | 26657 | 3.87 Gbp | 26651 | 3.87 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
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