Tachyglossus aculeatus
short-beaked echidna
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid9261 |
CC BY-SA 3.0 JKMelville (wikimedia)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 93.01x | 126.331 GB |
| Bionano | 246.21x | 1.143 GB |
| PacBio SubReads | 58.29x | 606.932 GB |
| Phase Genomics | 14.70x | 23.352 GB |
Coverage based on genome size 2.89 Gbp.
Last upload on 19 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/phase/ .
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/phase/ .
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 17 September 2020
mTacAcu1.pri.cur.20200917.fasta.gz (603 MB)
Version assembly_curated from 17 September 2020
mTacAcu1.pri.cur.20200917.fasta.gz (603 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 42.50 Mbp | 1 | 171.48 Mbp |
| 20 | 14 | 29.89 Mbp | 3 | 136.33 Mbp |
| 30 | 25 | 23.47 Mbp | 6 | 84.22 Mbp |
| 40 | 38 | 19.15 Mbp | 10 | 63.38 Mbp |
| 50 | 57 | 12.24 Mbp | 15 | 59.61 Mbp |
| 60 | 87 | 6.65 Mbp | 21 | 40.09 Mbp |
| 70 | 177 | 1.42 Mbp | 31 | 17.06 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.755x | 834 | 2.18 Gbp | 309 | 2.21 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 17 September 2020
mTacAcu1.alt.cur.20200917.fasta.gz (519 MB)
Version assembly_curated from 17 September 2020
mTacAcu1.alt.cur.20200917.fasta.gz (519 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 72 | 2.78 Mbp | 72 | 2.78 Mbp |
| 20 | 212 | 1.65 Mbp | 212 | 1.65 Mbp |
| 30 | 434 | 1.06 Mbp | 434 | 1.07 Mbp |
| 40 | 778 | 0.69 Mbp | 774 | 0.69 Mbp |
| 50 | 1296 | 0.45 Mbp | 1289 | 0.45 Mbp |
| 60 | 2191 | 0.22 Mbp | 2176 | 0.22 Mbp |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.652x | 3508 | 1.88 Gbp | 3482 | 1.89 Gbp |
NG based on genome size 2.89 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mTacAcu1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
mTacAcu1.MT.20191003.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.