Tachyglossus aculeatus

short-beaked echidna


Information

Resource
NCBI Taxonomy Browser NCBI:txid9261

CC BY-SA 3.0 JKMelville (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10x93.01x126.331 GB
Bionano246.21x1.143 GB
PacBio SubReads58.29x606.932 GB
Phase Genomics14.70x23.352 GB
Coverage based on genome size 2.89 Gbp.
Last upload on 19 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Tachyglossus_aculeatus/mTacAcu1/genomic_data/phase/ .

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 17 September 2020
mTacAcu1.pri.cur.20200917.fasta.gz (603 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 42.50 Mbp 1 171.48 Mbp
20 14 29.89 Mbp 3 136.33 Mbp
30 25 23.47 Mbp 6 84.22 Mbp
40 38 19.15 Mbp 10 63.38 Mbp
50 57 12.24 Mbp 15 59.61 Mbp
60 87 6.65 Mbp 21 40.09 Mbp
70 177 1.42 Mbp 31 17.06 Mbp
80 - - - -
90 - - - -
100 - - - -
0.755x 834 2.18 Gbp 309 2.21 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 17 September 2020
mTacAcu1.alt.cur.20200917.fasta.gz (519 MB)

Contigs Scaffolds
NG LG Len LG Len
10 72 2.78 Mbp 72 2.78 Mbp
20 212 1.65 Mbp 212 1.65 Mbp
30 434 1.06 Mbp 434 1.07 Mbp
40 778 0.69 Mbp 774 0.69 Mbp
50 1296 0.45 Mbp 1289 0.45 Mbp
60 2191 0.22 Mbp 2176 0.22 Mbp
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.652x 3508 1.88 Gbp 3482 1.89 Gbp
NG based on genome size 2.89 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
mTacAcu1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.