Trachurus trachurus
Atlantic horse mackerel
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid36212 |
CC BY-SA 4.0, Peter Southwood (wikimedia)
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | N/A | 71.023 GB |
Arima | N/A | 52.475 GB |
PacBio SubReads | N/A | 248.090 GB |
No genome size estimate available.
Last upload on 18 December 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Trachurus_trachurus/fTraTra1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trachurus_trachurus/fTraTra1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trachurus_trachurus/fTraTra1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Trachurus_trachurus/fTraTra1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trachurus_trachurus/fTraTra1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 December 2020
fTraTra1.pri.asm.20201216.fasta.gz (235 MB)
Version assembly_curated from 16 December 2020
fTraTra1.pri.asm.20201216.fasta.gz (235 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 4 | 17.80 Mbp | 2 | 40.66 Mbp |
20 | 8 | 15.98 Mbp | 4 | 37.40 Mbp |
30 | 15 | 10.02 Mbp | 6 | 36.28 Mbp |
40 | 24 | 8.13 Mbp | 8 | 35.83 Mbp |
50 | 36 | 6.26 Mbp | 10 | 35.45 Mbp |
60 | 50 | 5.23 Mbp | 13 | 33.39 Mbp |
70 | 68 | 4.00 Mbp | 15 | 31.05 Mbp |
80 | 91 | 3.02 Mbp | 18 | 29.25 Mbp |
90 | 128 | 1.63 Mbp | 21 | 25.35 Mbp |
100 | 453 | 11 bp | 218 | 9.80 Kbp |
1.000x | 454 | 0.82 Gbp | 219 | 0.82 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 16 December 2020
fTraTra1.alt.asm.20201216.fasta.gz (235 MB)
Version assembly_curated from 16 December 2020
fTraTra1.alt.asm.20201216.fasta.gz (235 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 15 | 3.91 Mbp | 15 | 3.92 Mbp |
20 | 39 | 3.10 Mbp | 38 | 3.16 Mbp |
30 | 68 | 2.48 Mbp | 67 | 2.53 Mbp |
40 | 105 | 2.06 Mbp | 104 | 2.08 Mbp |
50 | 152 | 1.55 Mbp | 148 | 1.61 Mbp |
60 | 213 | 1.20 Mbp | 206 | 1.24 Mbp |
70 | 294 | 0.84 Mbp | 282 | 0.89 Mbp |
80 | 410 | 0.59 Mbp | 392 | 0.62 Mbp |
90 | 587 | 0.35 Mbp | 558 | 0.38 Mbp |
100 | 1259 | 742 bp | 1184 | 742 bp |
1.000x | 1260 | 0.82 Gbp | 1185 | 0.82 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fTraTra1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
fTraTra1.MT.20191003.fasta.gz (5 KB)
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