Trachurus trachurus

Atlantic horse mackerel


Information

Resource
NCBI Taxonomy Browser NCBI:txid36212

CC BY-SA 4.0, Peter Southwood (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A71.023 GB
ArimaN/A52.475 GB
PacBio SubReadsN/A248.090 GB
No genome size estimate available.
Last upload on 18 December 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Trachurus_trachurus/fTraTra1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trachurus_trachurus/fTraTra1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Trachurus_trachurus/fTraTra1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 16 December 2020
fTraTra1.pri.asm.20201216.fasta.gz (235 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 17.80 Mbp 2 40.66 Mbp
20 8 15.98 Mbp 4 37.40 Mbp
30 15 10.02 Mbp 6 36.28 Mbp
40 24 8.13 Mbp 8 35.83 Mbp
50 36 6.26 Mbp 10 35.45 Mbp
60 50 5.23 Mbp 13 33.39 Mbp
70 68 4.00 Mbp 15 31.05 Mbp
80 91 3.02 Mbp 18 29.25 Mbp
90 128 1.63 Mbp 21 25.35 Mbp
100 453 11 bp 218 9.80 Kbp
1.000x 454 0.82 Gbp 219 0.82 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 16 December 2020
fTraTra1.alt.asm.20201216.fasta.gz (235 MB)

Contigs Scaffolds
NG LG Len LG Len
10 15 3.91 Mbp 15 3.92 Mbp
20 39 3.10 Mbp 38 3.16 Mbp
30 68 2.48 Mbp 67 2.53 Mbp
40 105 2.06 Mbp 104 2.08 Mbp
50 152 1.55 Mbp 148 1.61 Mbp
60 213 1.20 Mbp 206 1.24 Mbp
70 294 0.84 Mbp 282 0.89 Mbp
80 410 0.59 Mbp 392 0.62 Mbp
90 587 0.35 Mbp 558 0.38 Mbp
100 1259 742 bp 1184 742 bp
1.000x 1260 0.82 Gbp 1185 0.82 Gbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fTraTra1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

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