Xenentodon cancila

freshwater garfish


Information

Resource
NCBI Taxonomy Browser NCBI:txid129108

Raw Data

Datatype Approximate Coverage Download Size
10xN/A29.222 GB
ArimaN/A61.539 GB
BionanoN/A0.396 GB
PacBio SubReadsN/A111.435 GB
No genome size estimate available.
Last upload on 10 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 24 April 2020
fXenCan1.pri.cur.20200424.fasta.gz (209 MB)

Contigs Scaffolds
NG LG Len LG Len
10 7 7.51 Mbp 2 33.84 Mbp
20 19 5.61 Mbp 4 33.16 Mbp
30 33 4.28 Mbp 6 32.45 Mbp
40 54 3.09 Mbp 8 31.16 Mbp
50 82 2.20 Mbp 11 28.68 Mbp
60 123 1.45 Mbp 13 28.28 Mbp
70 188 0.89 Mbp 16 27.89 Mbp
80 309 0.40 Mbp 19 26.42 Mbp
90 595 0.16 Mbp 21 26.01 Mbp
100 1781 19 bp 408 12.32 Kbp
1.000x 1782 0.73 Gbp 409 0.74 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 24 April 2020
fXenCan1.alt.cur.20200424.fasta.gz (192 MB)

Contigs Scaffolds
NG LG Len LG Len
10 88 0.59 Mbp 88 0.59 Mbp
20 217 0.45 Mbp 217 0.45 Mbp
30 386 0.34 Mbp 386 0.34 Mbp
40 604 0.27 Mbp 604 0.27 Mbp
50 881 0.21 Mbp 881 0.21 Mbp
60 1233 0.17 Mbp 1233 0.17 Mbp
70 1682 0.13 Mbp 1682 0.13 Mbp
80 2274 95.96 Kbp 2274 95.96 Kbp
90 3138 59.77 Kbp 3137 59.88 Kbp
100 5170 265 bp 5168 265 bp
1.000x 5171 0.66 Gbp 5169 0.66 Gbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fXenCan1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.