Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | N/A | 29.222 GB |
Arima | N/A | 61.539 GB |
Bionano | N/A | 0.396 GB |
PacBio SubReads | N/A | 111.435 GB |
No genome size estimate available.
Last upload on 10 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Xenentodon_cancila/fXenCan1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 24 April 2020
fXenCan1.pri.cur.20200424.fasta.gz (209 MB)
Version assembly_curated from 24 April 2020
fXenCan1.pri.cur.20200424.fasta.gz (209 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 7 | 7.51 Mbp | 2 | 33.84 Mbp |
20 | 19 | 5.61 Mbp | 4 | 33.16 Mbp |
30 | 33 | 4.28 Mbp | 6 | 32.45 Mbp |
40 | 54 | 3.09 Mbp | 8 | 31.16 Mbp |
50 | 82 | 2.20 Mbp | 11 | 28.68 Mbp |
60 | 123 | 1.45 Mbp | 13 | 28.28 Mbp |
70 | 188 | 0.89 Mbp | 16 | 27.89 Mbp |
80 | 309 | 0.40 Mbp | 19 | 26.42 Mbp |
90 | 595 | 0.16 Mbp | 21 | 26.01 Mbp |
100 | 1781 | 19 bp | 408 | 12.32 Kbp |
1.000x | 1782 | 0.73 Gbp | 409 | 0.74 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 24 April 2020
fXenCan1.alt.cur.20200424.fasta.gz (192 MB)
Version assembly_curated from 24 April 2020
fXenCan1.alt.cur.20200424.fasta.gz (192 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 88 | 0.59 Mbp | 88 | 0.59 Mbp |
20 | 217 | 0.45 Mbp | 217 | 0.45 Mbp |
30 | 386 | 0.34 Mbp | 386 | 0.34 Mbp |
40 | 604 | 0.27 Mbp | 604 | 0.27 Mbp |
50 | 881 | 0.21 Mbp | 881 | 0.21 Mbp |
60 | 1233 | 0.17 Mbp | 1233 | 0.17 Mbp |
70 | 1682 | 0.13 Mbp | 1682 | 0.13 Mbp |
80 | 2274 | 95.96 Kbp | 2274 | 95.96 Kbp |
90 | 3138 | 59.77 Kbp | 3137 | 59.88 Kbp |
100 | 5170 | 265 bp | 5168 | 265 bp |
1.000x | 5171 | 0.66 Gbp | 5169 | 0.66 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fXenCan1.MT.20191003.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 3 October 2019
fXenCan1.MT.20191003.fasta.gz (5 KB)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.