Arvicola amphibius

European water vole


Information

Resource
NCBI Taxonomy Browser NCBI:txid1047088

CC BY 2.0, Peter Trimming (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A152.080 GB
BionanoN/A3.790 GB
Dovetail GenomicsN/A53.501 GB
PacBio SubReadsN/A269.719 GB
No genome size estimate available.
Last upload on 2 February 2020.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_cambridge from 9 April 2020
mArvAmp1.pri.asm.20200409.fasta.gz (682 MB)

Contigs Scaffolds
NG LG Len LG Len
10 12 13.99 Mbp 1 159.31 Mbp
20 31 10.54 Mbp 2 151.61 Mbp
30 56 8.21 Mbp 4 131.75 Mbp
40 88 6.37 Mbp 6 117.46 Mbp
50 127 5.31 Mbp 8 103.42 Mbp
60 174 4.31 Mbp 10 85.75 Mbp
70 236 3.28 Mbp 13 68.09 Mbp
80 318 2.35 Mbp 17 62.47 Mbp
90 445 1.40 Mbp 22 34.66 Mbp
100 1099 819 bp 247 4.31 Kbp
1.000x 1100 2.30 Gbp 248 2.32 Gbp
Individual 1 Alternate Assembly
Version assembly_cambridge from 9 April 2020
mArvAmp1.alt.asm.20200409.fasta.gz (531 MB)

Contigs Scaffolds
NG LG Len LG Len
10 404 0.34 Mbp 404 0.34 Mbp
20 1000 0.26 Mbp 1000 0.26 Mbp
30 1747 0.21 Mbp 1747 0.21 Mbp
40 2649 0.18 Mbp 2649 0.18 Mbp
50 3731 0.15 Mbp 3731 0.15 Mbp
60 5029 0.12 Mbp 5029 0.12 Mbp
70 6601 0.10 Mbp 6601 0.10 Mbp
80 8561 79.28 Kbp 8561 79.28 Kbp
90 11158 56.36 Kbp 11158 56.36 Kbp
100 16246 157 bp 16246 157 bp
1.000x 16247 1.76 Gbp 16247 1.76 Gbp
NG based on each assembly size.
(No genome size estimate available.)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.