Callithrix jacchus

common marmoset


Information

NCBI Taxonomy Browser
CC BY-SA 2.0 Luciano Marra (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x55.69x91.494 GB
Arima105.81x180.263 GB
Bionano154.52x0.863 GB
Illumina141.54x237.365 GB
PacBio SubReads63.44x378.467 GB
Coverage based on genome size 3.43 Gbp.
Last upload on 28 June 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies


Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mCalJac1.MT.20190820.fasta.gz (5 KB)

Individual 1 Maternal Assembly
Version assembly_nhgri_rockefeller_trio_1.6 from 30 August 2019
mCalJac1.mat.asm.20190830.fasta.gz (758 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 23.59 Mbp 1 202.58 Mbp
20 27 17.91 Mbp 3 162.95 Mbp
30 50 11.92 Mbp 5 138.74 Mbp
40 84 8.83 Mbp 8 127.44 Mbp
50 130 6.02 Mbp 11 111.97 Mbp
60 204 3.72 Mbp 14 93.53 Mbp
70 329 1.98 Mbp 18 55.95 Mbp
80 686 0.30 Mbp 27 24.93 Mbp
90 - - - -
100 - - - -
0.822x 1837 2.82 Gbp 769 2.84 Gbp
Individual 1 Paternal Assembly
Version assembly_nhgri_rockefeller_trio_1.6 from 30 August 2019
mCalJac1.pat.asm.20190830.fasta.gz (758 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 35.26 Mbp 1 202.81 Mbp
20 18 24.65 Mbp 3 169.37 Mbp
30 34 18.02 Mbp 5 155.97 Mbp
40 55 14.60 Mbp 8 130.00 Mbp
50 85 9.83 Mbp 10 126.10 Mbp
60 131 5.79 Mbp 13 110.03 Mbp
70 218 2.50 Mbp 17 73.79 Mbp
80 731 0.14 Mbp 25 24.83 Mbp
90 - - - -
100 - - - -
0.823x 2288 2.82 Gbp 1096 2.86 Gbp
NG based on genome size 3.43 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.