Cuculus canorus
common cuckoo
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid55661 |
CC BY 2.0 Ron Knight (flickr)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 90.95x | 60.946 GB |
| Arima | 86.51x | 72.339 GB |
| Bionano | 204.62x | 0.588 GB |
| PacBio SubReads | 64.31x | 155.723 GB |
Coverage based on genome size 1.40 Gbp.
Last upload on 14 July 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Cuculus_canorus/bCucCan1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cuculus_canorus/bCucCan2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cuculus_canorus/bCucCan1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cuculus_canorus/bCucCan1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Cuculus_canorus/bCucCan2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cuculus_canorus/bCucCan1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cuculus_canorus/bCucCan1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.6 from 16 December 2020
bCucCan1.pri.asm.20201216.fasta.gz (343 MB)
Version assembly_vgp_standard_1.6 from 16 December 2020
bCucCan1.pri.asm.20201216.fasta.gz (343 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 63.34 Mbp | 0 | 206.48 Mbp |
| 20 | 4 | 34.85 Mbp | 1 | 122.85 Mbp |
| 30 | 9 | 29.13 Mbp | 3 | 69.31 Mbp |
| 40 | 14 | 22.83 Mbp | 5 | 48.37 Mbp |
| 50 | 21 | 15.84 Mbp | 8 | 39.35 Mbp |
| 60 | 32 | 11.24 Mbp | 13 | 23.59 Mbp |
| 70 | 48 | 6.20 Mbp | 19 | 18.41 Mbp |
| 80 | 85 | 1.83 Mbp | 31 | 7.49 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.842x | 448 | 1.18 Gbp | 209 | 1.19 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.6 from 16 December 2020
bCucCan1.alt.asm.20201216.fasta.gz (310 MB)
Version assembly_vgp_standard_1.6 from 16 December 2020
bCucCan1.alt.asm.20201216.fasta.gz (310 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 11 | 9.03 Mbp | 11 | 9.03 Mbp |
| 20 | 31 | 6.16 Mbp | 31 | 6.16 Mbp |
| 30 | 57 | 4.62 Mbp | 57 | 4.62 Mbp |
| 40 | 92 | 3.39 Mbp | 92 | 3.39 Mbp |
| 50 | 141 | 2.36 Mbp | 141 | 2.36 Mbp |
| 60 | 215 | 1.52 Mbp | 215 | 1.52 Mbp |
| 70 | 361 | 0.53 Mbp | 361 | 0.53 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.757x | 979 | 1.06 Gbp | 979 | 1.06 Gbp |
NG based on genome size 1.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
bCucCan1.MT.20191216.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 16 December 2019
bCucCan1.MT.20191216.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.