Dendropsophus ebraccatus

hourglass treefrog


Information

NCBI Taxonomy Browser
CC BY 2.0 Brian Gratwicke (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x55.90x70.302 GB
Arima72.40x98.020 GB
Bionano177.92x0.527 GB
Illumina145.95x185.066 GB
PacBio SubReads69.98x304.866 GB
Coverage based on genome size 2.52 Gbp.
Last upload on 13 June 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies


Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
aDenEbr1.MT.20190820.fasta.gz (5 KB)

Individual 1 Maternal Assembly
Version assembly_nhgri_trio_1.6 from 8 October 2019
aDenEbr1.mat.asm.20191008.fasta.gz (604 MB)

Contigs Scaffolds
NG LG Len LG Len
10 7 27.07 Mbp 1 128.22 Mbp
20 18 19.33 Mbp 4 89.91 Mbp
30 34 14.85 Mbp 7 79.83 Mbp
40 52 11.95 Mbp 10 70.09 Mbp
50 77 8.86 Mbp 14 60.91 Mbp
60 113 5.75 Mbp 19 45.84 Mbp
70 173 2.90 Mbp 26 33.56 Mbp
80 351 0.58 Mbp 40 8.03 Mbp
90 - - 403 0.11 Mbp
100 - - - -
0.889x 3370 2.24 Gbp 2584 2.36 Gbp
Individual 1 Paternal Assembly
Version assembly_nhgri_trio_1.6 from 8 October 2019
aDenEbr1.pat.asm.20191008.fasta.gz (598 MB)

Contigs Scaffolds
NG LG Len LG Len
10 8 24.92 Mbp 1 145.35 Mbp
20 20 18.70 Mbp 3 137.21 Mbp
30 34 15.42 Mbp 5 102.15 Mbp
40 54 10.61 Mbp 8 78.14 Mbp
50 83 7.39 Mbp 12 61.52 Mbp
60 126 4.88 Mbp 16 47.01 Mbp
70 195 2.58 Mbp 24 24.43 Mbp
80 391 0.55 Mbp 43 5.95 Mbp
90 - - 432 0.13 Mbp
100 - - - -
0.892x 3316 2.25 Gbp 2487 2.36 Gbp
NG based on genome size 2.52 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.