Gallus gallus

chicken


Information

Resource
NCBI Taxonomy Browser NCBI:txid9031

(pixabay)

Raw Data

Datatype Approximate Coverage Download Size
10x241.49x143.454 GB
Arima277.66x189.254 GB
Bionano456.16x1.025 GB
Illumina183.08x109.707 GB
PacBio SubReads102.01x213.318 GB
Coverage based on genome size 1.21 Gbp.
Last upload on 5 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal4/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal5/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal3/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
bGalGal1.MT.20191002.fasta.gz (5 KB)
Individual 1 Maternal Assembly
Version assembly_rockefeller_trio_1.6 from 17 October 2019
bGalGal1.mat.asm.20191017.fasta.gz (286 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 65.39 Mbp 0 147.88 Mbp
20 4 29.02 Mbp 1 110.93 Mbp
30 9 23.81 Mbp 3 90.31 Mbp
40 14 22.53 Mbp 4 74.16 Mbp
50 21 16.50 Mbp 6 34.59 Mbp
60 31 9.96 Mbp 11 20.07 Mbp
70 48 4.80 Mbp 18 13.97 Mbp
80 402 73.42 Kbp 33 5.23 Mbp
90 - - - -
100 - - - -
0.816x 863 0.99 Gbp 600 1.05 Gbp
Individual 1 Paternal Assembly
Version assembly_rockefeller_trio_1.6 from 17 October 2019
bGalGal1.pat.asm.20191017.fasta.gz (303 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 48.49 Mbp 0 148.33 Mbp
20 5 34.45 Mbp 1 110.73 Mbp
30 9 23.49 Mbp 3 90.04 Mbp
40 15 19.68 Mbp 4 85.71 Mbp
50 22 14.98 Mbp 5 74.41 Mbp
60 31 10.49 Mbp 8 35.80 Mbp
70 45 6.21 Mbp 14 17.75 Mbp
80 83 1.29 Mbp 24 6.02 Mbp
90 - - - -
100 - - - -
0.861x 738 1.04 Gbp 485 1.06 Gbp
NG based on genome size 1.21 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.