Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 79.15x | 52.802 GB |
| Arima | 277.66x | 189.254 GB |
| Bionano | 456.16x | 1.025 GB |
| Illumina | 183.08x | 109.707 GB |
| PacBio SubReads | 102.01x | 213.318 GB |
Coverage based on genome size 1.21 Gbp.
Last upload on 17 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal3/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal3/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
No primary assembly available.
No primary assembly available.
Individual 1 Alternate Assembly
No alternate assembly available.
No alternate assembly available.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
bGalGal1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
bGalGal1.MT.20191002.fasta.gz (5 KB)
Individual 1 Maternal Assembly
Version assembly_rockefeller_trio_1.6 from 17 October 2019
bGalGal1.mat.asm.20191017.fasta.gz (286 MB)
Version assembly_rockefeller_trio_1.6 from 17 October 2019
bGalGal1.mat.asm.20191017.fasta.gz (286 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 65.39 Mbp | 0 | 147.88 Mbp |
| 20 | 4 | 29.02 Mbp | 1 | 110.93 Mbp |
| 30 | 9 | 23.81 Mbp | 3 | 90.31 Mbp |
| 40 | 14 | 22.53 Mbp | 4 | 74.16 Mbp |
| 50 | 21 | 16.50 Mbp | 6 | 34.59 Mbp |
| 60 | 31 | 9.96 Mbp | 11 | 20.07 Mbp |
| 70 | 48 | 4.80 Mbp | 18 | 13.97 Mbp |
| 80 | 402 | 73.42 Kbp | 33 | 5.23 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.816x | 863 | 0.99 Gbp | 600 | 1.05 Gbp |
Individual 1 Paternal Assembly
Version assembly_rockefeller_trio_1.6 from 17 October 2019
bGalGal1.pat.asm.20191017.fasta.gz (303 MB)
Version assembly_rockefeller_trio_1.6 from 17 October 2019
bGalGal1.pat.asm.20191017.fasta.gz (303 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 2 | 48.49 Mbp | 0 | 148.33 Mbp |
| 20 | 5 | 34.45 Mbp | 1 | 110.73 Mbp |
| 30 | 9 | 23.49 Mbp | 3 | 90.04 Mbp |
| 40 | 15 | 19.68 Mbp | 4 | 85.71 Mbp |
| 50 | 22 | 14.98 Mbp | 5 | 74.41 Mbp |
| 60 | 31 | 10.49 Mbp | 8 | 35.80 Mbp |
| 70 | 45 | 6.21 Mbp | 14 | 17.75 Mbp |
| 80 | 83 | 1.29 Mbp | 24 | 6.02 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.861x | 738 | 1.04 Gbp | 485 | 1.06 Gbp |
NG based on genome size 1.21 Gbp.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.