Gallus gallus

chicken


Information

Resource
NCBI Taxonomy Browser NCBI:txid9031

(pixabay)

Raw Data

Datatype Approximate Coverage Download Size
10x241.49x143.454 GB
Arima277.66x189.254 GB
Bionano456.16x1.043 GB
Illumina183.08x109.707 GB
PacBio SubReads102.01x213.318 GB
Coverage based on genome size 1.21 Gbp.
Last upload on 14 July 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal4/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal5/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal3/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal5/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Gallus_gallus/bGalGal1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
bGalGal1.MT.20191002.fasta.gz (5 KB)
Individual 1 Maternal Assembly
Version assembly_rockefeller_trio_1.6 from 17 October 2019
bGalGal1.mat.asm.20191017.fasta.gz (286 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 65.39 Mbp 0 147.88 Mbp
20 4 29.02 Mbp 1 110.93 Mbp
30 9 23.81 Mbp 3 90.31 Mbp
40 14 22.53 Mbp 4 74.16 Mbp
50 21 16.50 Mbp 6 34.59 Mbp
60 31 9.96 Mbp 11 20.07 Mbp
70 48 4.80 Mbp 18 13.97 Mbp
80 402 73.42 Kbp 33 5.23 Mbp
90 - - - -
100 - - - -
0.816x 863 0.99 Gbp 600 1.05 Gbp
Individual 1 Paternal Assembly
Version assembly_rockefeller_trio_1.6 from 17 October 2019
bGalGal1.pat.asm.20191017.fasta.gz (303 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 48.49 Mbp 0 148.33 Mbp
20 5 34.45 Mbp 1 110.73 Mbp
30 9 23.49 Mbp 3 90.04 Mbp
40 15 19.68 Mbp 4 85.71 Mbp
50 22 14.98 Mbp 5 74.41 Mbp
60 31 10.49 Mbp 8 35.80 Mbp
70 45 6.21 Mbp 14 17.75 Mbp
80 83 1.29 Mbp 24 6.02 Mbp
90 - - - -
100 - - - -
0.861x 738 1.04 Gbp 485 1.06 Gbp
NG based on genome size 1.21 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.