Phoenicopterus ruber

American flamingo


Information

CC BY 2.0 Paul Asman and Jill Lenoble (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x82.40x49.167 GB
Arima191.88x121.862 GB
Bionano455.07x0.935 GB
PacBio ScrapsN/A179.240 GB
PacBio SubReads61.27x132.832 GB
Coverage based on genome size 1.25 Gbp.
Last upload on 11 January 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_standard_1.5 from 11 July 2019
bPhoRub1.pri.asm.20190711.fasta.gz (366 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 34.81 Mbp 0 219.66 Mbp
20 6 28.88 Mbp 1 129.95 Mbp
30 11 20.53 Mbp 2 86.71 Mbp
40 18 17.49 Mbp 3 85.47 Mbp
50 25 14.70 Mbp 5 72.93 Mbp
60 35 11.73 Mbp 7 52.51 Mbp
70 48 8.36 Mbp 9 41.40 Mbp
80 65 5.45 Mbp 13 25.17 Mbp
90 100 2.07 Mbp 19 17.03 Mbp
100 - - - -
0.990x 370 1.24 Gbp 113 1.25 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.5 from 11 July 2019
bPhoRub1.alt.asm.20190711.fasta.gz (347 MB)

Contigs Scaffolds
NG LG Len LG Len
10 27 3.50 Mbp 27 3.50 Mbp
20 69 2.67 Mbp 69 2.67 Mbp
30 122 2.11 Mbp 122 2.11 Mbp
40 189 1.68 Mbp 189 1.68 Mbp
50 274 1.30 Mbp 274 1.30 Mbp
60 382 1.02 Mbp 382 1.02 Mbp
70 534 0.65 Mbp 534 0.65 Mbp
80 809 0.31 Mbp 809 0.31 Mbp
90 2014 46.63 Kbp 2014 46.63 Kbp
100 - - - -
0.934x 3529 1.17 Gbp 3529 1.17 Gbp
NG based on genome size 1.25 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.