Rana temporaria

common frog


Information

Resource
NCBI Taxonomy Browser NCBI:txid8407

CC BY-NC 2.0 abejorro34 (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A250.988 GB
BionanoN/A2.186 GB
Dovetail GenomicsN/A222.656 GB
PacBio SubReadsN/A579.652 GB
No genome size estimate available.
Last upload on 8 January 2020.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_cambridge from 2 March 2020
aRanTem1.pri.asm.20200302.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 19 15.82 Mbp 1 367.07 Mbp
20 48 12.12 Mbp 2 350.89 Mbp
30 86 9.67 Mbp 3 350.50 Mbp
40 133 7.77 Mbp 4 286.91 Mbp
50 192 6.32 Mbp 7 161.61 Mbp
60 269 4.43 Mbp 10 109.47 Mbp
70 376 3.28 Mbp 15 38.30 Mbp
80 531 2.13 Mbp 35 15.36 Mbp
90 791 1.14 Mbp 82 5.02 Mbp
100 2423 9 bp 960 563 bp
1.000x 2424 4.10 Gbp 961 4.22 Gbp
Individual 1 Alternate Assembly
Version assembly_cambridge from 2 March 2020
aRanTem1.alt.asm.20200302.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 184 1.52 Mbp 184 1.52 Mbp
20 473 1.09 Mbp 473 1.09 Mbp
30 860 0.85 Mbp 860 0.85 Mbp
40 1346 0.68 Mbp 1346 0.68 Mbp
50 1954 0.55 Mbp 1954 0.55 Mbp
60 2694 0.45 Mbp 2694 0.45 Mbp
70 3614 0.35 Mbp 3614 0.35 Mbp
80 4838 0.25 Mbp 4838 0.25 Mbp
90 6798 0.14 Mbp 6798 0.14 Mbp
100 11998 116 bp 11998 116 bp
1.000x 11999 3.68 Gbp 11999 3.68 Gbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
aRanTem1.MT.20191003.fasta.gz (6 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.