Trachurus trachurus

Atlantic horse mackerel


Information

NCBI Taxonomy Browser
CC BY-SA 4.0, Peter Southwood (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A71.023 GB
ArimaN/A52.475 GB
PacBio SubReadsN/A248.090 GB
No genome size estimate available.
Last upload on 18 December 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies


Individual 1 Primary Assembly
Version assembly_cambridge from 20 January 2020
fTraTra1.pri.asm.20200120.fasta.gz (242 MB)

Contigs Scaffolds
NG LG Len LG Len
10 4 17.80 Mbp 1 40.76 Mbp
20 9 14.23 Mbp 3 35.79 Mbp
30 15 10.02 Mbp 6 32.52 Mbp
40 25 7.76 Mbp 8 31.61 Mbp
50 37 6.26 Mbp 11 29.70 Mbp
60 52 5.10 Mbp 14 26.96 Mbp
70 70 3.99 Mbp 17 24.15 Mbp
80 94 2.82 Mbp 21 16.10 Mbp
90 134 1.33 Mbp 39 2.78 Mbp
100 488 11 bp 281 9.84 Kbp
1.000x 489 0.83 Gbp 282 0.83 Gbp
Individual 1 Alternate Assembly
Version assembly_cambridge from 20 January 2020
fTraTra1.alt.asm.20200120.fasta.gz (236 MB)

Contigs Scaffolds
NG LG Len LG Len
10 15 3.91 Mbp 15 3.92 Mbp
20 38 3.12 Mbp 38 3.16 Mbp
30 67 2.48 Mbp 66 2.53 Mbp
40 103 2.06 Mbp 101 2.09 Mbp
50 148 1.56 Mbp 145 1.63 Mbp
60 206 1.22 Mbp 200 1.27 Mbp
70 284 0.86 Mbp 274 0.92 Mbp
80 395 0.61 Mbp 380 0.64 Mbp
90 563 0.37 Mbp 539 0.39 Mbp
100 1197 159 bp 1142 159 bp
1.000x 1198 0.81 Gbp 1143 0.81 Gbp
NG based on each assembly size.
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 3 October 2019
fTraTra1.MT.20191003.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.