Tursiops truncatus

bottlenose dolphin


Information

Resource
NCBI Taxonomy Browser NCBI:txid9739

Resource Primary Assembly Alternate Assembly
GenBank GCA_011762595.1
ENA GCA_011762595.1
UCSC Genome Browser GCA_011762595.1

Resource Maternal Assembly Paternal Assembly
GenBank GCA_011762535.1 GCA_011762515.1
ENA GCA_011762535.1 GCA_011762515.1
UCSC Genome Browser GCA_011762535.1 GCA_011762515.1
public domain

Raw Data

Datatype Approximate Coverage Download Size
10x100.37x154.610 GB
Arima73.86x144.567 GB
Bionano236.40x1.047 GB
Illumina134.61x215.556 GB
PacBio SubReads63.70x349.496 GB
Coverage based on genome size 3.20 Gbp.
Last upload on 29 August 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mTurTru1.MT.20190820.fasta.gz (5 KB)

Individual 1 Maternal Assembly
Version assembly_rockefeller_trio_1.6 from 30 August 2019
mTurTru1.mat.asm.20190830.fasta.gz (641 MB)

Contigs Scaffolds
NG LG Len LG Len
10 9 23.41 Mbp 2 120.55 Mbp
20 26 15.76 Mbp 4 108.43 Mbp
30 50 11.70 Mbp 8 97.23 Mbp
40 81 8.64 Mbp 11 88.99 Mbp
50 122 6.85 Mbp 15 78.15 Mbp
60 184 3.72 Mbp 19 55.44 Mbp
70 321 1.18 Mbp 29 22.07 Mbp
80 - - - -
90 - - - -
100 - - - -
0.744x 1765 2.38 Gbp 1116 2.39 Gbp
Individual 1 Paternal Assembly
Version assembly_rockefeller_trio_1.6 from 30 August 2019
mTurTru1.pat.asm.20190830.fasta.gz (631 MB)

Contigs Scaffolds
NG LG Len LG Len
10 8 29.62 Mbp 1 149.93 Mbp
20 21 20.46 Mbp 4 108.57 Mbp
30 40 15.12 Mbp 7 101.97 Mbp
40 64 11.24 Mbp 11 87.03 Mbp
50 98 8.16 Mbp 15 77.88 Mbp
60 149 4.67 Mbp 20 46.18 Mbp
70 386 0.21 Mbp 31 9.60 Mbp
80 - - - -
90 - - - -
100 - - - -
0.729x 2151 2.33 Gbp 1283 2.39 Gbp
NG based on genome size 3.20 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.