Acanthisitta chloris

rifleman


Information

NCBI Taxonomy Browser
CC BY-SA 2.0 digitaltrails (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x74.50x36.427 GB
Arima94.12x56.596 GB
Bionano592.44x0.641 GB
PacBio SubReads65.46x118.549 GB
Coverage based on genome size 1.05 Gbp.
Last upload on 17 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 27 November 2019
bAcaChl1.pri.cur.20191127.fasta.gz (311 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 57.89 Mbp 0 136.57 Mbp
20 3 40.40 Mbp 1 96.25 Mbp
30 6 36.90 Mbp 3 62.81 Mbp
40 10 24.09 Mbp 5 50.82 Mbp
50 16 16.68 Mbp 7 40.83 Mbp
60 23 13.17 Mbp 10 28.50 Mbp
70 33 9.38 Mbp 14 22.52 Mbp
80 47 5.50 Mbp 19 19.70 Mbp
90 75 2.68 Mbp 26 11.89 Mbp
100 399 3.37 Kbp 204 7.11 Kbp
1.000x 400 1.07 Gbp 205 1.08 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 27 November 2019
bAcaChl1.alt.cur.20191127.fasta.gz (244 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 6.39 Mbp 10 6.39 Mbp
20 26 4.25 Mbp 26 4.25 Mbp
30 49 2.97 Mbp 49 2.97 Mbp
40 81 2.23 Mbp 81 2.23 Mbp
50 123 1.75 Mbp 123 1.75 Mbp
60 177 1.33 Mbp 177 1.33 Mbp
70 251 0.94 Mbp 251 0.94 Mbp
80 370 0.49 Mbp 370 0.49 Mbp
90 864 79.57 Kbp 863 79.78 Kbp
100 2898 209 bp 2878 812 bp
1.000x 2899 0.83 Gbp 2879 0.83 Gbp
NG based on genome size 1.05 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
bAcaChl1.MT.20191004.fasta.gz (5 KB)

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