Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | N/A | 36.427 GB |
| Arima | N/A | 56.596 GB |
| Bionano | N/A | 0.641 GB |
| PacBio SubReads | N/A | 118.549 GB |
No genome size estimate available.
Last upload on 17 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.5 from 11 October 2019
bAcaChl1.pri.asm.20191011.fasta.gz (313 MB)
Version assembly_vgp_standard_1.5 from 11 October 2019
bAcaChl1.pri.asm.20191011.fasta.gz (313 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 57.89 Mbp | 0 | 135.34 Mbp |
| 20 | 3 | 40.40 Mbp | 1 | 96.29 Mbp |
| 30 | 6 | 36.93 Mbp | 3 | 62.85 Mbp |
| 40 | 10 | 24.09 Mbp | 5 | 50.82 Mbp |
| 50 | 16 | 16.68 Mbp | 7 | 40.89 Mbp |
| 60 | 23 | 13.17 Mbp | 10 | 34.43 Mbp |
| 70 | 33 | 9.41 Mbp | 14 | 22.61 Mbp |
| 80 | 47 | 5.50 Mbp | 19 | 19.79 Mbp |
| 90 | 75 | 2.68 Mbp | 26 | 12.44 Mbp |
| 100 | 397 | 255 bp | 206 | 7.11 Kbp |
| 1.000x | 398 | 1.07 Gbp | 207 | 1.10 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.5 from 11 October 2019
bAcaChl1.alt.asm.20191011.fasta.gz (243 MB)
Version assembly_vgp_standard_1.5 from 11 October 2019
bAcaChl1.alt.asm.20191011.fasta.gz (243 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 10 | 6.39 Mbp | 10 | 6.39 Mbp |
| 20 | 26 | 4.25 Mbp | 26 | 4.25 Mbp |
| 30 | 49 | 2.97 Mbp | 49 | 2.97 Mbp |
| 40 | 81 | 2.23 Mbp | 81 | 2.23 Mbp |
| 50 | 123 | 1.75 Mbp | 123 | 1.75 Mbp |
| 60 | 177 | 1.33 Mbp | 177 | 1.33 Mbp |
| 70 | 250 | 0.95 Mbp | 250 | 0.95 Mbp |
| 80 | 368 | 0.50 Mbp | 368 | 0.50 Mbp |
| 90 | 851 | 80.32 Kbp | 851 | 80.32 Kbp |
| 100 | 2854 | 812 bp | 2854 | 812 bp |
| 1.000x | 2855 | 0.83 Gbp | 2855 | 0.83 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
bAcaChl1.MT.20191004.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 October 2019
bAcaChl1.MT.20191004.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.