Acanthisitta chloris
rifleman
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid57068 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_016904835.1 | GCA_016880875.1 |
| ENA | GCA_016904835.1 | GCA_016880875.1 |
| UCSC Genome Browser | GCA_016904835.1 | GCA_016880875.1 |
CC BY-SA 2.0 digitaltrails (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 78.23 Gbp | 74.50x | 36.427 GB |
| Arima | 98.82 Gbp | 94.12x | 56.596 GB |
| Bionano | 622.06 Gbp | 592.44x | 0.641 GB |
| PacBio SubReads | 68.74 Gbp | 65.46x | 118.549 GB |
Coverage based on genome size 1.05 Gbp.
Last upload on 17 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl4/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acanthisitta_chloris/bAcaChl1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 May 2021
bAcaChl1.pri.cur.20210526.fasta.gz (311 MB)
Version assembly_curated from 26 May 2021
bAcaChl1.pri.cur.20210526.fasta.gz (311 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 57.89 Mbp | 0 | 136.57 Mbp |
| 20 | 3 | 40.40 Mbp | 1 | 96.25 Mbp |
| 30 | 6 | 36.90 Mbp | 3 | 62.81 Mbp |
| 40 | 10 | 24.09 Mbp | 4 | 51.96 Mbp |
| 50 | 15 | 16.73 Mbp | 7 | 40.83 Mbp |
| 60 | 22 | 13.37 Mbp | 9 | 34.43 Mbp |
| 70 | 31 | 9.52 Mbp | 13 | 24.09 Mbp |
| 80 | 44 | 5.94 Mbp | 18 | 20.30 Mbp |
| 90 | 68 | 2.84 Mbp | 24 | 15.24 Mbp |
| 100 | 141 | 0.47 Mbp | 35 | 5.17 Mbp |
| 1.022x | 400 | 1.07 Gbp | 205 | 1.08 Gbp |
NG based on genome size 1.05 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 26 May 2021
bAcaChl1.alt.cur.20210526.fasta.gz (240 MB)
Version assembly_curated from 26 May 2021
bAcaChl1.alt.cur.20210526.fasta.gz (240 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 13 | 5.84 Mbp | 13 | 5.84 Mbp |
| 20 | 37 | 3.67 Mbp | 37 | 3.67 Mbp |
| 30 | 74 | 2.37 Mbp | 74 | 2.37 Mbp |
| 40 | 126 | 1.72 Mbp | 126 | 1.72 Mbp |
| 50 | 200 | 1.18 Mbp | 200 | 1.18 Mbp |
| 60 | 314 | 0.66 Mbp | 314 | 0.66 Mbp |
| 70 | 746 | 91.73 Kbp | 746 | 92.01 Kbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.788x | 2899 | 0.83 Gbp | 2879 | 0.83 Gbp |
NG based on genome size 1.05 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
bAcaChl1.MT.20191004.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 October 2019
bAcaChl1.MT.20191004.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.