Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | N/A | 158.814 GB |
| Bionano | N/A | 2.769 GB |
| Dovetail Genomics | N/A | 160.485 GB |
| Illumina | N/A | 136.869 GB |
| PacBio SubReads | N/A | 636.692 GB |
No genome size estimate available.
Last upload on 7 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 3 Primary Assembly
No primary assembly available.
No primary assembly available.
Individual 3 Alternate Assembly
No alternate assembly available.
No alternate assembly available.
Individual 3 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fAciRut3.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fAciRut3.MT.20191002.fasta.gz (5 KB)
Individual 3 Maternal Assembly
Version assembly_cambridge from 9 July 2019
fAciRut3.mat.asm.20190709.fasta.gz (474 MB)
Version assembly_cambridge from 9 July 2019
fAciRut3.mat.asm.20190709.fasta.gz (474 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 22.62 Mbp | 1 | 101.81 Mbp |
| 20 | 13 | 20.03 Mbp | 3 | 97.81 Mbp |
| 30 | 22 | 15.87 Mbp | 4 | 83.70 Mbp |
| 40 | 33 | 12.96 Mbp | 6 | 80.04 Mbp |
| 50 | 47 | 10.83 Mbp | 9 | 51.89 Mbp |
| 60 | 64 | 8.19 Mbp | 13 | 39.01 Mbp |
| 70 | 89 | 5.35 Mbp | 17 | 32.89 Mbp |
| 80 | 127 | 3.45 Mbp | 23 | 14.59 Mbp |
| 90 | 194 | 1.62 Mbp | 41 | 5.10 Mbp |
| 100 | 630 | 8.99 Kbp | 254 | 14.14 Kbp |
| 1.000x | 631 | 1.64 Gbp | 255 | 1.64 Gbp |
Individual 3 Paternal Assembly
Version assembly_cambridge from 9 July 2019
fAciRut3.pat.asm.20190709.fasta.gz (481 MB)
Version assembly_cambridge from 9 July 2019
fAciRut3.pat.asm.20190709.fasta.gz (481 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 26.37 Mbp | 1 | 105.03 Mbp |
| 20 | 12 | 21.82 Mbp | 2 | 104.95 Mbp |
| 30 | 20 | 16.58 Mbp | 4 | 85.26 Mbp |
| 40 | 31 | 14.23 Mbp | 7 | 65.74 Mbp |
| 50 | 44 | 11.50 Mbp | 9 | 54.60 Mbp |
| 60 | 60 | 8.88 Mbp | 13 | 35.68 Mbp |
| 70 | 82 | 5.76 Mbp | 18 | 31.51 Mbp |
| 80 | 119 | 3.43 Mbp | 26 | 15.52 Mbp |
| 90 | 192 | 1.53 Mbp | 43 | 5.85 Mbp |
| 100 | 624 | 851 bp | 238 | 16.39 Kbp |
| 1.000x | 625 | 1.66 Gbp | 239 | 1.66 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.