Acipenser ruthenus

sterlet


Information

Raw Data

Datatype Approximate Coverage Download Size
10xN/A158.814 GB
BionanoN/A2.769 GB
Dovetail GenomicsN/A160.485 GB
IlluminaN/A136.869 GB
PacBio ScrapsN/A269.318 GB
PacBio SubReadsN/A426.325 GB
No genome size estimate available.
Last upload on 27 June 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Acipenser_ruthenus/fAciRut3/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Individual 3 Maternal Assembly
Version assembly_cambridge from 9 July 2019
fAciRut3.mat.asm.20190709.fasta.gz (474 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 22.62 Mbp 1 101.81 Mbp
20 13 20.03 Mbp 3 97.81 Mbp
30 22 15.87 Mbp 4 83.70 Mbp
40 33 12.96 Mbp 6 80.04 Mbp
50 47 10.83 Mbp 9 51.89 Mbp
60 64 8.19 Mbp 13 39.01 Mbp
70 89 5.35 Mbp 17 32.89 Mbp
80 127 3.45 Mbp 23 14.59 Mbp
90 194 1.62 Mbp 41 5.10 Mbp
100 630 8.99 Kbp 254 14.14 Kbp
1.000x 631 1.64 Gbp 255 1.64 Gbp
Individual 3 Paternal Assembly
Version assembly_cambridge from 9 July 2019
fAciRut3.pat.asm.20190709.fasta.gz (481 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 26.37 Mbp 1 105.03 Mbp
20 12 21.82 Mbp 2 104.95 Mbp
30 20 16.58 Mbp 4 85.26 Mbp
40 31 14.23 Mbp 7 65.74 Mbp
50 44 11.50 Mbp 9 54.60 Mbp
60 60 8.88 Mbp 13 35.68 Mbp
70 82 5.76 Mbp 18 31.51 Mbp
80 119 3.43 Mbp 26 15.52 Mbp
90 192 1.53 Mbp 43 5.85 Mbp
100 624 851 bp 238 16.39 Kbp
1.000x 625 1.66 Gbp 239 1.66 Gbp
No genome size estimate available.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.