Alca torda

razorbill


Information

Resource
NCBI Taxonomy Browser NCBI:txid28689

Resource Primary Assembly Alternate Assembly
GenBank GCA_008658365.1 GCA_008658355.1
ENA GCA_008658365.1 GCA_008658355.1
UCSC Genome Browser GCA_008658365.1 GCA_008658355.1

CC BY 2.0 Paul Wordingham (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x77.97 Gbp64.97x37.941 GB
Arima105.80 Gbp88.17x53.061 GB
Bionano354.30 Gbp295.25x0.656 GB
PacBio SubReads77.63 Gbp64.69x134.283 GB
Coverage based on genome size 1.20 Gbp.
Last upload on 19 December 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 13 June 2019
bAlcTor1.pri.cur.20190613.fasta.gz (345 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 33.33 Mbp 0 215.87 Mbp
20 6 31.92 Mbp 1 165.05 Mbp
30 11 23.53 Mbp 1 165.05 Mbp
40 16 21.62 Mbp 2 125.51 Mbp
50 22 18.22 Mbp 4 82.44 Mbp
60 30 15.65 Mbp 5 70.99 Mbp
70 39 9.53 Mbp 7 47.75 Mbp
80 56 5.80 Mbp 10 41.49 Mbp
90 85 2.85 Mbp 13 34.32 Mbp
100 - - - -
0.979x 321 1.17 Gbp 94 1.18 Gbp
NG based on genome size 1.20 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 18 June 2019
bAlcTor1.alt.cur.20190618.fasta.gz (362 MB)

Contigs Scaffolds
NG LG Len LG Len
10 20 4.92 Mbp 20 4.92 Mbp
20 48 3.68 Mbp 48 3.68 Mbp
30 84 2.99 Mbp 84 2.99 Mbp
40 128 2.50 Mbp 128 2.50 Mbp
50 181 2.00 Mbp 181 2.00 Mbp
60 250 1.52 Mbp 250 1.52 Mbp
70 342 1.13 Mbp 342 1.13 Mbp
80 475 0.74 Mbp 475 0.74 Mbp
90 709 0.33 Mbp 709 0.33 Mbp
100 2334 31.15 Kbp 2334 31.15 Kbp
1.017x 3309 1.22 Gbp 3309 1.22 Gbp
NG based on genome size 1.20 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
bAlcTor1.MT.20190820.fasta.gz (5 KB)

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