Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 64.97x | 37.941 GB |
| Arima | 88.17x | 53.061 GB |
| Bionano | 295.25x | 0.656 GB |
| PacBio SubReads | 64.69x | 134.283 GB |
Coverage based on genome size 1.20 Gbp.
Last upload on 19 December 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alca_torda/bAlcTor1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 13 June 2019
bAlcTor1.pri.cur.20190613.fasta.gz (345 MB)
Version assembly_curated from 13 June 2019
bAlcTor1.pri.cur.20190613.fasta.gz (345 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 33.33 Mbp | 0 | 215.87 Mbp |
| 20 | 6 | 31.92 Mbp | 1 | 165.05 Mbp |
| 30 | 11 | 23.53 Mbp | 1 | 165.05 Mbp |
| 40 | 16 | 21.62 Mbp | 2 | 125.51 Mbp |
| 50 | 22 | 18.22 Mbp | 4 | 82.44 Mbp |
| 60 | 30 | 15.65 Mbp | 5 | 70.99 Mbp |
| 70 | 39 | 9.53 Mbp | 7 | 47.75 Mbp |
| 80 | 56 | 5.80 Mbp | 10 | 41.49 Mbp |
| 90 | 85 | 2.85 Mbp | 13 | 34.32 Mbp |
| 100 | - | - | - | - |
| 0.979x | 321 | 1.17 Gbp | 94 | 1.18 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 18 June 2019
bAlcTor1.alt.cur.20190618.fasta.gz (362 MB)
Version assembly_curated from 18 June 2019
bAlcTor1.alt.cur.20190618.fasta.gz (362 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 20 | 4.92 Mbp | 20 | 4.92 Mbp |
| 20 | 48 | 3.68 Mbp | 48 | 3.68 Mbp |
| 30 | 84 | 2.99 Mbp | 84 | 2.99 Mbp |
| 40 | 128 | 2.50 Mbp | 128 | 2.50 Mbp |
| 50 | 181 | 2.00 Mbp | 181 | 2.00 Mbp |
| 60 | 250 | 1.52 Mbp | 250 | 1.52 Mbp |
| 70 | 342 | 1.13 Mbp | 342 | 1.13 Mbp |
| 80 | 475 | 0.74 Mbp | 475 | 0.74 Mbp |
| 90 | 709 | 0.33 Mbp | 709 | 0.33 Mbp |
| 100 | 2334 | 31.15 Kbp | 2334 | 31.15 Kbp |
| 1.017x | 3309 | 1.22 Gbp | 3309 | 1.22 Gbp |
NG based on genome size 1.20 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
bAlcTor1.MT.20190820.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 20 August 2019
bAlcTor1.MT.20190820.fasta.gz (5 KB)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.