Alosa sapidissima

American shad


Information

Resource
NCBI Taxonomy Browser NCBI:txid34773

Resource Primary Assembly Alternate Assembly
GenBank GCA_018492685.1 GCA_018492705.1
ENA GCA_018492685.1 GCA_018492705.1
UCSC Genome Browser GCA_018492685.1 GCA_018492705.1

CC0 Raver Duane (Pixnio)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
Arima106.88 Gbp118.75x67.014 GB
Bionano870.49 Gbp967.22x1.619 GB
PacBio SubReads664.47 Gbp738.30x1205.364 GB
Coverage based on genome size 0.90 Gbp.
Last upload on 21 February 2021.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Alosa_sapidissima/fAloSap1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alosa_sapidissima/fAloSap1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Alosa_sapidissima/fAloSap1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 21 April 2021
fAloSap1.pri.cur.20210421.fasta.gz (250 MB)

Contigs Scaffolds
NG LG Len LG Len
10 14 4.46 Mbp 1 44.39 Mbp
20 39 3.21 Mbp 3 40.36 Mbp
30 70 2.44 Mbp 6 39.35 Mbp
40 112 1.92 Mbp 8 38.59 Mbp
50 165 1.55 Mbp 10 38.44 Mbp
60 231 1.19 Mbp 13 36.83 Mbp
70 323 0.83 Mbp 15 35.20 Mbp
80 456 0.54 Mbp 18 32.25 Mbp
90 690 0.26 Mbp 21 31.74 Mbp
100 - - 29 0.27 Mbp
0.998x 1712 0.90 Gbp 73 0.90 Gbp
NG based on genome size 0.90 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 21 April 2021
fAloSap1.alt.cur.20210421.fasta.gz (240 MB)

Contigs Scaffolds
NG LG Len LG Len
10 58 1.03 Mbp 58 1.03 Mbp
20 162 0.73 Mbp 162 0.73 Mbp
30 307 0.55 Mbp 307 0.55 Mbp
40 492 0.43 Mbp 492 0.43 Mbp
50 729 0.33 Mbp 729 0.33 Mbp
60 1046 0.24 Mbp 1046 0.24 Mbp
70 1494 0.16 Mbp 1494 0.16 Mbp
80 2192 97.06 Kbp 2192 97.06 Kbp
90 3639 36.79 Kbp 3639 36.79 Kbp
100 - - - -
0.947x 5411 0.85 Gbp 5410 0.85 Gbp
NG based on genome size 0.90 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.