Amblyraja radiata

Thorny skate


Information

Resource
NCBI Taxonomy Browser NCBI:txid386614

Resource Primary Assembly Alternate Assembly
GenBank GCA_010909765.1 GCA_010909745.1
ENA GCA_010909765.1 GCA_010909745.1
UCSC Genome Browser GCA_010909765.1 GCA_010909745.1

public domain

Raw Data

Datatype Approximate Coverage Download Size
10x95.20x114.690 GB
Arima165.27x167.949 GB
Bionano1549.31x4.938 GB
Illumina371.45x380.408 GB
PacBio SubReads128.24x467.477 GB
Coverage based on genome size 2.07 Gbp.
Last upload on 25 November 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad4/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad5/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 13 January 2020
sAmbRad1.pri.cur.20200113.fasta.gz (688 MB)

Contigs Scaffolds
NG LG Len LG Len
10 31 4.85 Mbp 1 151.57 Mbp
20 81 3.40 Mbp 2 131.32 Mbp
30 151 2.57 Mbp 4 115.64 Mbp
40 243 2.06 Mbp 6 91.02 Mbp
50 357 1.64 Mbp 8 75.33 Mbp
60 497 1.34 Mbp 11 62.87 Mbp
70 675 1.01 Mbp 15 52.89 Mbp
80 917 0.73 Mbp 19 46.75 Mbp
90 1262 0.50 Mbp 23 40.56 Mbp
100 1817 0.28 Mbp 29 33.34 Mbp
1.142x 4710 2.37 Gbp 957 2.56 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 13 January 2020
sAmbRad1.alt.cur.20200113.fasta.gz (430 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1027 0.15 Mbp 1027 0.15 Mbp
20 2698 0.11 Mbp 2698 0.11 Mbp
30 4902 83.52 Kbp 4901 83.52 Kbp
40 7649 68.58 Kbp 7648 68.58 Kbp
50 10975 56.64 Kbp 10973 56.66 Kbp
60 15089 44.17 Kbp 15087 44.17 Kbp
70 21238 19.64 Kbp 21236 19.64 Kbp
80 - - - -
90 - - - -
100 - - - -
0.705x 21995 1.46 Gbp 21992 1.46 Gbp
NG based on genome size 2.07 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller_nanopore from 15 April 2020
sAmbRad1.MT.20200415.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.