Amblyraja radiata

thorny skate


Information

public domain

Raw Data

Datatype Approximate Coverage Download Size
10x95.20x114.690 GB
Arima165.27x167.949 GB
Bionano1549.31x4.938 GB
PacBio ScrapsN/A1821.173 GB
PacBio SubReads128.24x467.477 GB
Coverage based on genome size 2.07 Gbp.
Last upload on 23 April 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_nhgri_1.5 from 15 July 2019
sAmbRad1.pri.asm.20190715.fasta.gz (756 MB)

Contigs Scaffolds
NG LG Len LG Len
10 30 5.00 Mbp 0 213.25 Mbp
20 79 3.50 Mbp 2 149.09 Mbp
30 146 2.68 Mbp 3 133.14 Mbp
40 234 2.15 Mbp 5 105.59 Mbp
50 343 1.67 Mbp 8 76.84 Mbp
60 479 1.37 Mbp 10 71.59 Mbp
70 650 1.06 Mbp 14 51.62 Mbp
80 882 0.77 Mbp 18 43.57 Mbp
90 1206 0.53 Mbp 23 38.10 Mbp
100 1706 0.33 Mbp 29 32.22 Mbp
1.242x 6385 2.57 Gbp 2113 3.78 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_nhgri_1.5 from 15 July 2019
sAmbRad1.alt.asm.20190715.fasta.gz (545 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1097 0.14 Mbp 1097 0.14 Mbp
20 2835 0.10 Mbp 2835 0.10 Mbp
30 5092 82.32 Kbp 5092 82.32 Kbp
40 7855 68.81 Kbp 7855 68.81 Kbp
50 11118 58.81 Kbp 11118 58.81 Kbp
60 14941 50.06 Kbp 14941 50.06 Kbp
70 19476 41.57 Kbp 19476 41.57 Kbp
80 25096 32.27 Kbp 25096 32.27 Kbp
90 - - - -
100 - - - -
0.896x 33692 1.86 Gbp 33692 1.86 Gbp
NG based on genome size 2.07 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.