Amblyraja radiata
Thorny skate
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid386614 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_010909765.2 | GCA_010909745.1 |
| ENA | GCA_010909765.2 | GCA_010909745.1 |
| UCSC Genome Browser | GCA_010909765.2 | GCA_010909745.1 |
public domain
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 197.33 Gbp | 95.20x | 114.690 GB |
| Arima | 342.60 Gbp | 165.27x | 167.949 GB |
| Bionano | 3211.61 Gbp | 1549.31x | 4.938 GB |
| Illumina | 769.99 Gbp | 371.45x | 380.408 GB |
| PacBio SubReads | 265.83 Gbp | 128.24x | 467.477 GB |
Coverage based on genome size 2.07 Gbp.
Last upload on 25 November 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad4/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad5/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad4/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad5/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 December 2020
sAmbRad1.pri.cur.20201215.fasta.gz (688 MB)
Version assembly_curated from 15 December 2020
sAmbRad1.pri.cur.20201215.fasta.gz (688 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 31 | 4.85 Mbp | 1 | 151.57 Mbp |
| 20 | 81 | 3.40 Mbp | 2 | 131.32 Mbp |
| 30 | 151 | 2.57 Mbp | 4 | 115.64 Mbp |
| 40 | 243 | 2.06 Mbp | 6 | 91.02 Mbp |
| 50 | 357 | 1.64 Mbp | 8 | 75.33 Mbp |
| 60 | 497 | 1.34 Mbp | 11 | 62.87 Mbp |
| 70 | 675 | 1.01 Mbp | 15 | 52.89 Mbp |
| 80 | 917 | 0.73 Mbp | 19 | 46.75 Mbp |
| 90 | 1262 | 0.50 Mbp | 23 | 40.56 Mbp |
| 100 | 1817 | 0.28 Mbp | 29 | 33.34 Mbp |
| 1.142x | 4710 | 2.37 Gbp | 957 | 2.56 Gbp |
NG based on genome size 2.07 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 December 2020
sAmbRad1.alt.cur.20201215.fasta.gz (423 MB)
Version assembly_curated from 15 December 2020
sAmbRad1.alt.cur.20201215.fasta.gz (423 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1027 | 0.15 Mbp | 1027 | 0.15 Mbp |
| 20 | 2698 | 0.11 Mbp | 2698 | 0.11 Mbp |
| 30 | 4902 | 83.52 Kbp | 4901 | 83.52 Kbp |
| 40 | 7649 | 68.58 Kbp | 7648 | 68.58 Kbp |
| 50 | 10975 | 56.64 Kbp | 10973 | 56.66 Kbp |
| 60 | 15089 | 44.17 Kbp | 15087 | 44.17 Kbp |
| 70 | 21238 | 19.64 Kbp | 21236 | 19.64 Kbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.705x | 21995 | 1.46 Gbp | 21992 | 1.46 Gbp |
NG based on genome size 2.07 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller_nanopore from 15 April 2020
sAmbRad1.MT.20200415.fasta.gz (5 KB)
Version assembly_MT_rockefeller_nanopore from 15 April 2020
sAmbRad1.MT.20200415.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.