Amblyraja radiata

thorny skate


Information

NCBI Taxonomy Browser
public domain

Raw Data

Datatype Approximate Coverage Download Size
10x95.20x114.690 GB
Arima165.27x167.949 GB
Bionano1549.31x4.938 GB
Illumina371.45x380.408 GB
PacBio SubReads128.24x467.477 GB
Coverage based on genome size 2.07 Gbp.
Last upload on 25 November 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad4/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad5/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Amblyraja_radiata/sAmbRad1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_nhgri_1.5 from 28 October 2019
sAmbRad1.pri.asm.20191028.fasta.gz (692 MB)

Contigs Scaffolds
NG LG Len LG Len
10 30 4.97 Mbp 1 154.18 Mbp
20 79 3.49 Mbp 2 152.43 Mbp
30 148 2.63 Mbp 3 134.34 Mbp
40 236 2.13 Mbp 5 110.11 Mbp
50 346 1.67 Mbp 8 71.88 Mbp
60 483 1.36 Mbp 11 60.50 Mbp
70 657 1.03 Mbp 14 54.00 Mbp
80 894 0.75 Mbp 18 47.93 Mbp
90 1233 0.50 Mbp 23 39.10 Mbp
100 1785 0.28 Mbp 29 35.00 Mbp
1.144x 4727 2.37 Gbp 1314 3.48 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_nhgri_1.5 from 28 October 2019
sAmbRad1.alt.asm.20191028.fasta.gz (430 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1027 0.15 Mbp 1027 0.15 Mbp
20 2698 0.11 Mbp 2698 0.11 Mbp
30 4902 83.52 Kbp 4902 83.52 Kbp
40 7649 68.58 Kbp 7649 68.58 Kbp
50 10976 56.62 Kbp 10976 56.62 Kbp
60 15091 44.14 Kbp 15091 44.14 Kbp
70 21251 19.44 Kbp 21251 19.44 Kbp
80 - - - -
90 - - - -
100 - - - -
0.705x 21987 1.46 Gbp 21987 1.46 Gbp
NG based on genome size 2.07 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
sAmbRad1.MT.20190820.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.