Anabas testudineus
climbing perch
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid64144 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_900324465.3 | GCA_900650485.1 |
| ENA | GCA_900324465.3 | GCA_900650485.1 |
| UCSC Genome Browser | GCA_900324465.3 | GCA_900650485.1 |
public domain
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 120.50 Gbp | 181.84x | 78.050 GB |
| Arima | 98.84 Gbp | 149.14x | 50.861 GB |
| Bionano | 2412.22 Gbp | 3640.00x | 3.216 GB |
| PacBio SubReads | 38.98 Gbp | 58.82x | 69.835 GB |
Coverage based on genome size 0.66 Gbp.
Last upload on 9 March 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Anabas_testudineus/fAnaTes1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Anabas_testudineus/fAnaTes1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Anabas_testudineus/fAnaTes1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Anabas_testudineus/fAnaTes1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Anabas_testudineus/fAnaTes1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Anabas_testudineus/fAnaTes1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Anabas_testudineus/fAnaTes1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 December 2018
fAnaTes1.pri.cur.20181211.fasta.gz (149 MB)
Version assembly_curated from 11 December 2018
fAnaTes1.pri.cur.20181211.fasta.gz (149 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 4 | 13.92 Mbp | 2 | 28.52 Mbp |
| 20 | 9 | 12.15 Mbp | 4 | 27.36 Mbp |
| 30 | 15 | 9.90 Mbp | 6 | 26.09 Mbp |
| 40 | 22 | 7.97 Mbp | 9 | 25.06 Mbp |
| 50 | 33 | 4.57 Mbp | 12 | 23.46 Mbp |
| 60 | 51 | 2.85 Mbp | 15 | 21.92 Mbp |
| 70 | 85 | 1.50 Mbp | 18 | 19.93 Mbp |
| 80 | 169 | 0.37 Mbp | 21 | 18.69 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.833x | 316 | 0.55 Gbp | 50 | 0.56 Gbp |
NG based on genome size 0.66 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 11 December 2018
fAnaTes1.alt.cur.20181211.fasta.gz (157 MB)
Version assembly_curated from 11 December 2018
fAnaTes1.alt.cur.20181211.fasta.gz (157 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 15 | 3.23 Mbp | 14 | 3.31 Mbp |
| 20 | 39 | 2.24 Mbp | 37 | 2.38 Mbp |
| 30 | 76 | 1.53 Mbp | 72 | 1.60 Mbp |
| 40 | 127 | 1.07 Mbp | 121 | 1.14 Mbp |
| 50 | 202 | 0.71 Mbp | 192 | 0.75 Mbp |
| 60 | 322 | 0.43 Mbp | 305 | 0.46 Mbp |
| 70 | 557 | 0.17 Mbp | 520 | 0.18 Mbp |
| 80 | 2079 | 16.43 Kbp | 1922 | 18.26 Kbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.810x | 2677 | 0.54 Gbp | 2641 | 0.54 Gbp |
NG based on genome size 0.66 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 1 October 2019
fAnaTes1.MT.20191001.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 1 October 2019
fAnaTes1.MT.20191001.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.