Archocentrus_centrarchus

Datatype	Approximate Coverage	Download Size
10x	37.98x	24.686 GB
Bionano	1140.18x	1.789 GB
PacBio SubReads	76.88x	131.487 GB
Phase Genomics	92.71x	56.032 GB

Coverage based on genome size 0.99 Gbp.

Last upload on 27 February 2019.

Download each datatype using the AWS Command Line Interface:

aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/pacbio/ . --exclude "*scraps.bam"
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/phase/ .

Primary
Version assembly_curated from 8 February 2019
fArcCen1.pri.cur.20190208.fasta.gz (267 MB)

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	14	5.48 Mbp	2	39.88 Mbp
20	36	4.03 Mbp	4	38.52 Mbp
30	64	3.05 Mbp	7	36.50 Mbp
40	101	2.49 Mbp	10	36.04 Mbp
50	145	2.01 Mbp	12	35.59 Mbp
60	201	1.58 Mbp	15	31.46 Mbp
70	274	1.11 Mbp	19	29.29 Mbp
80	386	0.69 Mbp	22	24.62 Mbp
90	621	0.20 Mbp	39	2.57 Mbp
100	-	-	-	-
0.927x	932	0.92 Gbp	188	0.93 Gbp

Alternate
Version assembly_curated from 8 February 2019
fArcCen1.alt.cur.20190208.fasta.gz (308 MB)

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	50	1.51 Mbp	50	1.51 Mbp
20	129	1.09 Mbp	129	1.09 Mbp
30	232	0.85 Mbp	232	0.85 Mbp
40	365	0.65 Mbp	365	0.65 Mbp
50	541	0.49 Mbp	541	0.49 Mbp
60	780	0.35 Mbp	778	0.35 Mbp
70	1130	0.22 Mbp	1126	0.22 Mbp
80	1822	89.37 Kbp	1811	90.80 Kbp
90	3523	42.85 Kbp	3506	42.91 Kbp
100	6584	24.23 Kbp	6563	24.26 Kbp
1.046x	9305	1.03 Gbp	9292	1.03 Gbp

NG based on genome size 0.99 Gbp.

Mitochondrial
Version assembly_mt_milan from 8 March 2019
fArcCen1.MT.20190308.fasta.gz (5 KB)

vgp.github.io

Archocentrus centrarchus

flier cichlid

Information

Raw Data

Individual 1 Assemblies

Data Use Policy