Archocentrus centrarchus

flier cichlid


Information

public domain

Raw Data

Datatype Approximate Coverage Download Size
10x37.98x24.686 GB
Bionano1140.18x1.789 GB
PacBio SubReads76.88x131.487 GB
Phase Genomics92.71x56.032 GB
Coverage based on genome size 0.99 Gbp.
Last upload on 27 February 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/pacbio/ . --exclude "*scraps.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/phase/ .

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 8 February 2019
fArcCen1.pri.cur.20190208.fasta.gz (267 MB)

Contigs Scaffolds
NG LG Len LG Len
10 14 5.48 Mbp 2 39.88 Mbp
20 36 4.03 Mbp 4 38.52 Mbp
30 64 3.05 Mbp 7 36.50 Mbp
40 101 2.49 Mbp 10 36.04 Mbp
50 145 2.01 Mbp 12 35.59 Mbp
60 201 1.58 Mbp 15 31.46 Mbp
70 274 1.11 Mbp 19 29.29 Mbp
80 386 0.69 Mbp 22 24.62 Mbp
90 621 0.20 Mbp 39 2.57 Mbp
100 - - - -
0.927x 932 0.92 Gbp 188 0.93 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 8 February 2019
fArcCen1.alt.cur.20190208.fasta.gz (308 MB)

Contigs Scaffolds
NG LG Len LG Len
10 50 1.51 Mbp 50 1.51 Mbp
20 129 1.09 Mbp 129 1.09 Mbp
30 232 0.85 Mbp 232 0.85 Mbp
40 365 0.65 Mbp 365 0.65 Mbp
50 541 0.49 Mbp 541 0.49 Mbp
60 780 0.35 Mbp 778 0.35 Mbp
70 1130 0.22 Mbp 1126 0.22 Mbp
80 1822 89.37 Kbp 1811 90.80 Kbp
90 3523 42.85 Kbp 3506 42.91 Kbp
100 6584 24.23 Kbp 6563 24.26 Kbp
1.046x 9305 1.03 Gbp 9292 1.03 Gbp
NG based on genome size 0.99 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_milan from 8 March 2019
fArcCen1.MT.20190308.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.