Archocentrus centrarchus
flier cichlid
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid63155 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_007364275.2 | GCA_007364235.1 |
| ENA | GCA_007364275.2 | GCA_007364235.1 |
| UCSC Genome Browser | GCA_007364275.2 | GCA_007364235.1 |
public domain
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 37.52 Gbp | 37.98x | 24.686 GB |
| Bionano | 1126.56 Gbp | 1140.18x | 1.789 GB |
| PacBio SubReads | 75.96 Gbp | 76.88x | 131.487 GB |
| Phase Genomics | 91.60 Gbp | 92.71x | 56.032 GB |
Coverage based on genome size 0.99 Gbp.
Last upload on 27 February 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/phase/ .
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Archocentrus_centrarchus/fArcCen1/genomic_data/phase/ .
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 8 February 2019
fArcCen1.pri.cur.20190208.fasta.gz (267 MB)
Version assembly_curated from 8 February 2019
fArcCen1.pri.cur.20190208.fasta.gz (267 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 14 | 5.48 Mbp | 2 | 39.88 Mbp |
| 20 | 36 | 4.03 Mbp | 4 | 38.52 Mbp |
| 30 | 64 | 3.05 Mbp | 7 | 36.50 Mbp |
| 40 | 101 | 2.49 Mbp | 10 | 36.04 Mbp |
| 50 | 145 | 2.01 Mbp | 12 | 35.59 Mbp |
| 60 | 201 | 1.58 Mbp | 15 | 31.46 Mbp |
| 70 | 274 | 1.11 Mbp | 19 | 29.29 Mbp |
| 80 | 386 | 0.69 Mbp | 22 | 24.62 Mbp |
| 90 | 621 | 0.20 Mbp | 39 | 2.57 Mbp |
| 100 | - | - | - | - |
| 0.927x | 932 | 0.92 Gbp | 188 | 0.93 Gbp |
NG based on genome size 0.99 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 8 February 2019
fArcCen1.alt.cur.20190208.fasta.gz (308 MB)
Version assembly_curated from 8 February 2019
fArcCen1.alt.cur.20190208.fasta.gz (308 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 50 | 1.51 Mbp | 50 | 1.51 Mbp |
| 20 | 129 | 1.09 Mbp | 129 | 1.09 Mbp |
| 30 | 232 | 0.85 Mbp | 232 | 0.85 Mbp |
| 40 | 365 | 0.65 Mbp | 365 | 0.65 Mbp |
| 50 | 541 | 0.49 Mbp | 541 | 0.49 Mbp |
| 60 | 780 | 0.35 Mbp | 778 | 0.35 Mbp |
| 70 | 1130 | 0.22 Mbp | 1126 | 0.22 Mbp |
| 80 | 1822 | 89.37 Kbp | 1811 | 90.80 Kbp |
| 90 | 3523 | 42.85 Kbp | 3506 | 42.91 Kbp |
| 100 | 6584 | 24.23 Kbp | 6563 | 24.26 Kbp |
| 1.046x | 9305 | 1.03 Gbp | 9292 | 1.03 Gbp |
NG based on genome size 0.99 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 1 October 2019
fArcCen1.MT.20191001.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 1 October 2019
fArcCen1.MT.20191001.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.