Arvicanthis niloticus

African grass rat


Information

NCBI Taxonomy Browser
Copyright Huishi Toh, used with permission

Raw Data

Datatype Approximate Coverage Download Size
10x76.49x124.201 GB
Arima68.52x136.192 GB
Bionano121.92x0.862 GB
Illumina148.16x247.062 GB
PacBio SubReads60.95x357.288 GB
Coverage based on genome size 3.40 Gbp.
Last upload on 27 July 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies


Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mArvNil1.MT.20190820.fasta.gz (5 KB)

Individual 1 Maternal Assembly
Version assembly_rockefeller_trio_1.6 from 3 September 2019
mArvNil1.mat.asm.20190903.fasta.gz (659 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 25.57 Mbp 2 139.09 Mbp
20 28 16.42 Mbp 4 131.09 Mbp
30 54 11.48 Mbp 8 88.78 Mbp
40 89 7.78 Mbp 12 78.78 Mbp
50 142 5.00 Mbp 16 63.83 Mbp
60 262 1.62 Mbp 23 48.51 Mbp
70 1417 76.53 Kbp 42 0.88 Mbp
80 - - - -
90 - - - -
100 - - - -
0.723x 3141 2.46 Gbp 1615 2.49 Gbp
Individual 1 Paternal Assembly
Version assembly_rockefeller_trio_1.6 from 3 September 2019
mArvNil1.pat.asm.20190903.fasta.gz (659 MB)

Contigs Scaffolds
NG LG Len LG Len
10 7 38.05 Mbp 1 164.71 Mbp
20 18 23.56 Mbp 3 135.23 Mbp
30 38 13.77 Mbp 6 91.55 Mbp
40 67 9.55 Mbp 11 78.14 Mbp
50 112 5.58 Mbp 15 64.04 Mbp
60 216 1.65 Mbp 22 50.89 Mbp
70 1458 76.79 Kbp 34 4.38 Mbp
80 - - - -
90 - - - -
100 - - - -
0.724x 3317 2.46 Gbp 1754 2.52 Gbp
NG based on genome size 3.40 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.