Astatotilapia calliptera

Eastern happy


Information

CC BY-SA 2.0 Alexandra Tyers (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x124.20x78.888 GB
Bionano109.85x0.128 GB
PacBio SubReads77.04x269.612 GB
Coverage based on genome size 0.97 Gbp.
Last upload on 2 March 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ . --exclude "*scraps.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_standard_1.0 from 17 August 2018
fAstCal1.pri.asm.20180817.fasta.gz (263 MB)

Contigs Scaffolds
NG LG Len LG Len
10 8 8.80 Mbp 2 28.71 Mbp
20 22 5.90 Mbp 6 22.64 Mbp
30 40 4.47 Mbp 11 16.51 Mbp
40 64 3.78 Mbp 17 15.16 Mbp
50 94 2.67 Mbp 24 12.11 Mbp
60 137 2.02 Mbp 33 8.53 Mbp
70 193 1.46 Mbp 48 5.57 Mbp
80 281 0.85 Mbp 72 2.96 Mbp
90 579 99.96 Kbp 149 0.31 Mbp
100 - - - -
0.921x 1008 0.90 Gbp 549 0.90 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.0 from 17 August 2018
fAstCal1.alt.asm.20180817.fasta.gz (141 MB)

Contigs Scaffolds
NG LG Len LG Len
10 263 0.23 Mbp 263 0.23 Mbp
20 896 0.11 Mbp 896 0.11 Mbp
30 2146 57.56 Kbp 2146 57.56 Kbp
40 4480 31.24 Kbp 4480 31.24 Kbp
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.481x 8123 467.67 Mbp 8123 467.67 Mbp
NG based on genome size 0.97 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_milan from 4 March 2019
fAstCal1.MT.20190304.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.