Astatotilapia calliptera
Eastern happy
Information
CC BY-SA 2.0 Alexandra Tyers (flickr)
Raw Data
Datatype | Approximate Coverage | Download Size |
---|---|---|
10x | 124.20x | 78.888 GB |
Bionano | 109.85x | 0.128 GB |
PacBio SubReads | 77.04x | 269.612 GB |
Coverage based on genome size 0.97 Gbp.
Last upload on 2 March 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 30 May 2018
fAstCal1.pri.cur.20180530.fasta.gz (267 MB)
Version assembly_curated from 30 May 2018
fAstCal1.pri.cur.20180530.fasta.gz (267 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 11.57 Mbp | 1 | 52.51 Mbp |
20 | 15 | 9.12 Mbp | 3 | 41.43 Mbp |
30 | 28 | 6.68 Mbp | 6 | 39.99 Mbp |
40 | 46 | 5.08 Mbp | 8 | 38.68 Mbp |
50 | 68 | 3.98 Mbp | 11 | 36.68 Mbp |
60 | 99 | 2.48 Mbp | 13 | 35.85 Mbp |
70 | 145 | 1.69 Mbp | 16 | 34.07 Mbp |
80 | 219 | 0.88 Mbp | 19 | 31.47 Mbp |
90 | 625 | 49.40 Kbp | 122 | 64.48 Kbp |
100 | - | - | - | - |
0.904x | 738 | 0.88 Gbp | 248 | 0.88 Gbp |
Individual 1 Alternate Assembly
No alternate assembly available.
No alternate assembly available.
NG based on genome size 0.97 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fAstCal1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fAstCal1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.