Astatotilapia calliptera
Eastern happy
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid8154 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_900246225.5 | |
| ENA | GCA_900246225.5 | |
| UCSC Genome Browser | GCA_900246225.5 |
CC BY-SA 2.0 Alexandra Tyers (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 120.78 Gbp | 124.20x | 78.888 GB |
| Bionano | 106.83 Gbp | 109.85x | 0.128 GB |
| PacBio SubReads | 74.92 Gbp | 77.04x | 269.612 GB |
Coverage based on genome size 0.97 Gbp.
Last upload on 2 March 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 30 May 2018
fAstCal1.pri.cur.20180530.fasta.gz (267 MB)
Version assembly_curated from 30 May 2018
fAstCal1.pri.cur.20180530.fasta.gz (267 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 6 | 11.57 Mbp | 1 | 52.51 Mbp |
| 20 | 15 | 9.12 Mbp | 3 | 41.43 Mbp |
| 30 | 28 | 6.68 Mbp | 6 | 39.99 Mbp |
| 40 | 46 | 5.08 Mbp | 8 | 38.68 Mbp |
| 50 | 68 | 3.98 Mbp | 11 | 36.68 Mbp |
| 60 | 99 | 2.48 Mbp | 13 | 35.85 Mbp |
| 70 | 145 | 1.69 Mbp | 16 | 34.07 Mbp |
| 80 | 219 | 0.88 Mbp | 19 | 31.47 Mbp |
| 90 | 625 | 49.41 Kbp | 122 | 64.48 Kbp |
| 100 | - | - | - | - |
| 0.904x | 738 | 0.88 Gbp | 248 | 0.88 Gbp |
NG based on genome size 0.97 Gbp.
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.0 from 17 August 2018
fAstCal1.alt.asm.20180817.fasta.gz (141 MB)
Version assembly_vgp_standard_1.0 from 17 August 2018
fAstCal1.alt.asm.20180817.fasta.gz (141 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 263 | 0.23 Mbp | 263 | 0.23 Mbp |
| 20 | 896 | 0.11 Mbp | 896 | 0.11 Mbp |
| 30 | 2146 | 57.56 Kbp | 2146 | 57.56 Kbp |
| 40 | 4480 | 31.24 Kbp | 4480 | 31.24 Kbp |
| 50 | - | - | - | - |
| 60 | - | - | - | - |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.481x | 8123 | 467.67 Mbp | 8123 | 467.67 Mbp |
NG based on genome size 0.97 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fAstCal1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fAstCal1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.