Astatotilapia calliptera

Eastern happy


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
CC BY-SA 2.0 Alexandra Tyers (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x124.20x78.888 GB
Bionano109.85x0.128 GB
PacBio SubReads77.04x269.612 GB
Coverage based on genome size 0.97 Gbp.
Last upload on 2 March 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Astatotilapia_calliptera/fAstCal1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Individual 1 Primary Assembly
Version assembly_curated from 30 May 2018
fAstCal1.pri.cur.20180530.fasta.gz (267 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 11.57 Mbp 1 52.51 Mbp
20 15 9.12 Mbp 3 41.43 Mbp
30 28 6.68 Mbp 6 39.99 Mbp
40 46 5.08 Mbp 8 38.68 Mbp
50 68 3.98 Mbp 11 36.68 Mbp
60 99 2.48 Mbp 13 35.85 Mbp
70 145 1.69 Mbp 16 34.07 Mbp
80 219 0.88 Mbp 19 31.47 Mbp
90 625 49.40 Kbp 122 64.48 Kbp
100 - - - -
0.904x 738 0.88 Gbp 248 0.88 Gbp
Individual 1 Alternate Assembly
No alternate assembly available.

NG based on genome size 0.97 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_milan from 4 March 2019
fAstCal1.MT.20190304.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.