Astatotilapia calliptera

Eastern happy


Information

Resource
NCBI Taxonomy Browser NCBI:txid8154

Resource Primary Assembly Alternate Assembly
GenBank GCA_900246225.5
ENA GCA_900246225.5
UCSC Genome Browser GCA_900246225.5

CC BY-SA 2.0 Alexandra Tyers (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x120.78 Gbp124.20x78.888 GB
Bionano106.83 Gbp109.85x0.128 GB
PacBio SubReads74.92 Gbp77.04x269.612 GB
Coverage based on genome size 0.97 Gbp.
Last upload on 2 March 2018.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 30 May 2018
fAstCal1.pri.cur.20180530.fasta.gz (267 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 11.57 Mbp 1 52.51 Mbp
20 15 9.12 Mbp 3 41.43 Mbp
30 28 6.68 Mbp 6 39.99 Mbp
40 46 5.08 Mbp 8 38.68 Mbp
50 68 3.98 Mbp 11 36.68 Mbp
60 99 2.48 Mbp 13 35.85 Mbp
70 145 1.69 Mbp 16 34.07 Mbp
80 219 0.88 Mbp 19 31.47 Mbp
90 625 49.41 Kbp 122 64.48 Kbp
100 - - - -
0.904x 738 0.88 Gbp 248 0.88 Gbp
NG based on genome size 0.97 Gbp.
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.0 from 17 August 2018
fAstCal1.alt.asm.20180817.fasta.gz (141 MB)

Contigs Scaffolds
NG LG Len LG Len
10 263 0.23 Mbp 263 0.23 Mbp
20 896 0.11 Mbp 896 0.11 Mbp
30 2146 57.56 Kbp 2146 57.56 Kbp
40 4480 31.24 Kbp 4480 31.24 Kbp
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.481x 8123 467.67 Mbp 8123 467.67 Mbp
NG based on genome size 0.97 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fAstCal1.MT.20191002.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.