Asterias rubens

common starfish


Information

Resource
NCBI Taxonomy Browser NCBI:txid7604

Resource Primary Assembly Alternate Assembly
GenBank GCA_902459465.3 GCA_902459445.1
ENA GCA_902459465.3 GCA_902459445.1
UCSC Genome Browser GCA_902459465.3 GCA_902459445.1

CC BY-SA 4.0, Hans Hillewaert (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
Dovetail Genomics128.52 Gbp307.76x77.682 GB
Illumina119.48 Gbp286.10x78.804 GB
PacBio SubReads47.09 Gbp112.77x83.954 GB
Coverage based on genome size 417.60 Mbp.
Last upload on 8 August 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Asterias_rubens/eAstRub1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Asterias_rubens/eAstRub1/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Asterias_rubens/eAstRub1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 9 August 2019
eAstRub1.pri.cur.20190809.fasta.gz (119 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 2.88 Mbp 1 25.66 Mbp
20 26 2.43 Mbp 3 22.72 Mbp
30 45 2.02 Mbp 4 22.60 Mbp
40 67 1.76 Mbp 6 21.89 Mbp
50 93 1.38 Mbp 8 20.56 Mbp
60 126 1.11 Mbp 10 18.07 Mbp
70 168 0.88 Mbp 13 14.67 Mbp
80 224 0.63 Mbp 16 13.49 Mbp
90 306 0.39 Mbp 19 12.66 Mbp
100 620 6.70 Kbp 149 13.68 Kbp
1.000x 621 417.45 Mbp 150 417.60 Mbp
Individual 1 Alternate Assembly
Version assembly_curated from 9 August 2019
eAstRub1.alt.cur.20190809.fasta.gz (112 MB)

Contigs Scaffolds
NG LG Len LG Len
10 69 0.42 Mbp 69 0.42 Mbp
20 177 0.32 Mbp 177 0.32 Mbp
30 316 0.25 Mbp 316 0.25 Mbp
40 492 0.20 Mbp 492 0.20 Mbp
50 709 0.16 Mbp 709 0.16 Mbp
60 984 0.13 Mbp 984 0.13 Mbp
70 1340 95.76 Kbp 1340 95.76 Kbp
80 1811 70.84 Kbp 1811 70.84 Kbp
90 2485 46.60 Kbp 2485 46.60 Kbp
100 3969 135 bp 3968 135 bp
1.000x 3970 390.77 Mbp 3969 390.77 Mbp
NG based on genome size 417.60 Mbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 7 December 2019
eAstRub1.MT.20191207.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.