Aythya fuligula
tufted duck
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid219594 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_009819795.1 | GCA_009819845.1 |
| ENA | GCA_009819795.1 | GCA_009819845.1 |
| UCSC Genome Browser | GCA_009819795.1 | GCA_009819845.1 |
CC BY-SA 3.0 Charles J Sharp (wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 132.99 Gbp | 110.83x | 58.177 GB |
| Arima | 110.72 Gbp | 92.27x | 55.657 GB |
| Bionano | 445.82 Gbp | 371.51x | 0.918 GB |
| PacBio SubReads | 76.84 Gbp | 64.03x | 130.258 GB |
Coverage based on genome size 1.20 Gbp.
Last upload on 7 August 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 20 September 2019
bAytFul2.pri.cur.20190920.fasta.gz (326 MB)
Version assembly_curated from 20 September 2019
bAytFul2.pri.cur.20190920.fasta.gz (326 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 50.92 Mbp | 0 | 207.02 Mbp |
| 20 | 4 | 37.75 Mbp | 1 | 159.65 Mbp |
| 30 | 9 | 22.59 Mbp | 1 | 159.65 Mbp |
| 40 | 14 | 21.34 Mbp | 2 | 119.49 Mbp |
| 50 | 21 | 16.30 Mbp | 4 | 76.88 Mbp |
| 60 | 29 | 13.04 Mbp | 6 | 39.51 Mbp |
| 70 | 40 | 9.77 Mbp | 9 | 26.50 Mbp |
| 80 | 54 | 6.04 Mbp | 15 | 18.74 Mbp |
| 90 | 92 | 1.33 Mbp | 24 | 7.51 Mbp |
| 100 | - | - | - | - |
| 0.931x | 267 | 1.12 Gbp | 104 | 1.13 Gbp |
NG based on genome size 1.20 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 20 September 2019
bAytFul2.alt.cur.20190920.fasta.gz (298 MB)
Version assembly_curated from 20 September 2019
bAytFul2.alt.cur.20190920.fasta.gz (298 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 8 | 11.21 Mbp | 8 | 11.21 Mbp |
| 20 | 22 | 7.99 Mbp | 22 | 7.99 Mbp |
| 30 | 39 | 6.17 Mbp | 39 | 6.17 Mbp |
| 40 | 62 | 4.64 Mbp | 62 | 4.64 Mbp |
| 50 | 90 | 3.65 Mbp | 90 | 3.65 Mbp |
| 60 | 130 | 2.56 Mbp | 130 | 2.56 Mbp |
| 70 | 189 | 1.63 Mbp | 189 | 1.63 Mbp |
| 80 | 326 | 0.46 Mbp | 326 | 0.46 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.845x | 781 | 1.01 Gbp | 780 | 1.01 Gbp |
NG based on genome size 1.20 Gbp.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.