Aythya fuligula

tufted duck


Information

NCBI Taxonomy Browser
CC BY-SA 3.0 Charles J Sharp (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10x110.83x58.177 GB
Arima92.27x55.657 GB
Bionano371.51x0.918 GB
PacBio SubReads64.03x130.258 GB
Coverage based on genome size 1.20 Gbp.
Last upload on 7 August 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Aythya_fuligula/bAytFul2/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 2 Primary Assembly
Version assembly_curated from 20 September 2019
bAytFul2.pri.cur.20190920.fasta.gz (326 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 50.92 Mbp 0 207.02 Mbp
20 4 37.75 Mbp 1 159.65 Mbp
30 9 22.59 Mbp 1 159.65 Mbp
40 14 21.34 Mbp 2 119.49 Mbp
50 21 16.30 Mbp 4 76.88 Mbp
60 29 13.04 Mbp 6 39.51 Mbp
70 40 9.77 Mbp 9 26.50 Mbp
80 54 6.04 Mbp 15 18.74 Mbp
90 92 1.33 Mbp 24 7.51 Mbp
100 - - - -
0.931x 267 1.12 Gbp 104 1.13 Gbp
Individual 2 Alternate Assembly
Version assembly_curated from 20 September 2019
bAytFul2.alt.cur.20190920.fasta.gz (298 MB)

Contigs Scaffolds
NG LG Len LG Len
10 8 11.21 Mbp 8 11.21 Mbp
20 22 7.99 Mbp 22 7.99 Mbp
30 39 6.17 Mbp 39 6.17 Mbp
40 62 4.64 Mbp 62 4.64 Mbp
50 90 3.65 Mbp 90 3.65 Mbp
60 130 2.56 Mbp 130 2.56 Mbp
70 189 1.63 Mbp 189 1.63 Mbp
80 326 0.46 Mbp 326 0.46 Mbp
90 - - - -
100 - - - -
0.845x 781 1.01 Gbp 780 1.01 Gbp
NG based on genome size 1.20 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.