Bufo bufo
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Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid8384 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_905171765.1 | GCA_905171715.1 |
ENA | GCA_905171765.1 | GCA_905171715.1 |
UCSC Genome Browser | GCA_905171765.1 | GCA_905171715.1 |
CC BY-SA 2.0 Rolf Dietrich Brecher (flickr)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 566.39 Gbp | 112.27x | 343.284 GB |
Arima | 558.77 Gbp | 110.76x | 335.631 GB |
Bionano | 3252.26 Gbp | 644.67x | 3.695 GB |
PacBio SubReads | 360.41 Gbp | 71.44x | 648.243 GB |
Coverage based on genome size 5.04 Gbp.
Last upload on 16 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 16 December 2020
aBufBuf1.pri.cur.20201216.fasta.gz (1 GB)
Version assembly_curated from 16 December 2020
aBufBuf1.pri.cur.20201216.fasta.gz (1 GB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 32 | 11.73 Mbp | 0 | 0.84 Gbp |
20 | 83 | 8.46 Mbp | 1 | 0.84 Gbp |
30 | 151 | 6.52 Mbp | 1 | 0.84 Gbp |
40 | 239 | 5.01 Mbp | 2 | 0.71 Gbp |
50 | 350 | 3.94 Mbp | 3 | 0.64 Gbp |
60 | 495 | 2.99 Mbp | 3 | 0.64 Gbp |
70 | 693 | 2.19 Mbp | 4 | 0.57 Gbp |
80 | 968 | 1.52 Mbp | 5 | 439.63 Mbp |
90 | 1448 | 0.70 Mbp | 8 | 230.78 Mbp |
100 | 5505 | 25 bp | 1306 | 472 bp |
1.000x | 5506 | 5.03 Gbp | 1307 | 5.04 Gbp |
NG based on genome size 5.04 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 December 2020
aBufBuf1.alt.cur.20201216.fasta.gz (1 GB)
Version assembly_curated from 16 December 2020
aBufBuf1.alt.cur.20201216.fasta.gz (1 GB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 329 | 0.75 Mbp | 326 | 0.76 Mbp |
20 | 953 | 0.51 Mbp | 943 | 0.51 Mbp |
30 | 1789 | 0.40 Mbp | 1771 | 0.40 Mbp |
40 | 2860 | 0.31 Mbp | 2831 | 0.31 Mbp |
50 | 4230 | 0.24 Mbp | 4190 | 0.24 Mbp |
60 | 5982 | 0.19 Mbp | 5930 | 0.19 Mbp |
70 | 8283 | 0.14 Mbp | 8217 | 0.14 Mbp |
80 | 11424 | 0.10 Mbp | 11343 | 0.10 Mbp |
90 | 15972 | 67.64 Kbp | 15873 | 67.85 Kbp |
100 | 24350 | 166 bp | 24194 | 221 bp |
1.000x | 24351 | 3.74 Gbp | 24195 | 3.74 Gbp |
NG based on genome size 5.04 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 October 2019
aBufBuf1.MT.20191005.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 5 October 2019
aBufBuf1.MT.20191005.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.