Bufo bufo

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Information

Resource
NCBI Taxonomy Browser NCBI:txid8384

Resource Primary Assembly Alternate Assembly
GenBank GCA_905171765.1 GCA_905171715.1
ENA GCA_905171765.1 GCA_905171715.1
UCSC Genome Browser GCA_905171765.1 GCA_905171715.1

CC BY-SA 2.0 Rolf Dietrich Brecher (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x566.39 Gbp112.27x343.284 GB
Arima558.77 Gbp110.76x335.631 GB
Bionano3252.26 Gbp644.67x3.695 GB
PacBio SubReads360.41 Gbp71.44x648.243 GB
Coverage based on genome size 5.04 Gbp.
Last upload on 16 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Bufo_bufo/aBufBuf1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 16 December 2020
aBufBuf1.pri.cur.20201216.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 32 11.73 Mbp 0 0.84 Gbp
20 83 8.46 Mbp 1 0.84 Gbp
30 151 6.52 Mbp 1 0.84 Gbp
40 239 5.01 Mbp 2 0.71 Gbp
50 350 3.94 Mbp 3 0.64 Gbp
60 495 2.99 Mbp 3 0.64 Gbp
70 693 2.19 Mbp 4 0.57 Gbp
80 968 1.52 Mbp 5 439.63 Mbp
90 1448 0.70 Mbp 8 230.78 Mbp
100 5505 25 bp 1306 472 bp
1.000x 5506 5.03 Gbp 1307 5.04 Gbp
NG based on genome size 5.04 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 16 December 2020
aBufBuf1.alt.cur.20201216.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 329 0.75 Mbp 326 0.76 Mbp
20 953 0.51 Mbp 943 0.51 Mbp
30 1789 0.40 Mbp 1771 0.40 Mbp
40 2860 0.31 Mbp 2831 0.31 Mbp
50 4230 0.24 Mbp 4190 0.24 Mbp
60 5982 0.19 Mbp 5930 0.19 Mbp
70 8283 0.14 Mbp 8217 0.14 Mbp
80 11424 0.10 Mbp 11343 0.10 Mbp
90 15972 67.64 Kbp 15873 67.85 Kbp
100 24350 166 bp 24194 221 bp
1.000x 24351 3.74 Gbp 24195 3.74 Gbp
NG based on genome size 5.04 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 5 October 2019
aBufBuf1.MT.20191005.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.