Callithrix jacchus
common marmoset
Information
CC BY-SA 2.0 Luciano Marra (flickr)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 55.69x | 91.494 GB |
| Arima | 105.81x | 180.263 GB |
| Bionano | 154.52x | 0.863 GB |
| Illumina | 141.54x | 237.365 GB |
| PacBio SubReads | 63.44x | 378.467 GB |
Coverage based on genome size 3.43 Gbp.
Last upload on 28 June 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
No primary assembly available.
No primary assembly available.
Individual 1 Alternate Assembly
No alternate assembly available.
No alternate assembly available.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mCalJac1.MT.20190820.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 20 August 2019
mCalJac1.MT.20190820.fasta.gz (5 KB)
Individual 1 Maternal Assembly
Version assembly_nhgri_rockefeller_trio_1.6 from 30 August 2019
mCalJac1.mat.asm.20190830.fasta.gz (758 MB)
Version assembly_nhgri_rockefeller_trio_1.6 from 30 August 2019
mCalJac1.mat.asm.20190830.fasta.gz (758 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 10 | 23.59 Mbp | 1 | 202.58 Mbp |
| 20 | 27 | 17.91 Mbp | 3 | 162.95 Mbp |
| 30 | 50 | 11.92 Mbp | 5 | 138.74 Mbp |
| 40 | 84 | 8.83 Mbp | 8 | 127.44 Mbp |
| 50 | 130 | 6.02 Mbp | 11 | 111.97 Mbp |
| 60 | 204 | 3.72 Mbp | 14 | 93.53 Mbp |
| 70 | 329 | 1.98 Mbp | 18 | 55.95 Mbp |
| 80 | 686 | 0.30 Mbp | 27 | 24.93 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.822x | 1837 | 2.82 Gbp | 769 | 2.84 Gbp |
Individual 1 Paternal Assembly
Version assembly_nhgri_rockefeller_trio_1.6 from 30 August 2019
mCalJac1.pat.asm.20190830.fasta.gz (758 MB)
Version assembly_nhgri_rockefeller_trio_1.6 from 30 August 2019
mCalJac1.pat.asm.20190830.fasta.gz (758 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 6 | 35.26 Mbp | 1 | 202.81 Mbp |
| 20 | 18 | 24.65 Mbp | 3 | 169.37 Mbp |
| 30 | 34 | 18.02 Mbp | 5 | 155.97 Mbp |
| 40 | 55 | 14.60 Mbp | 8 | 130.00 Mbp |
| 50 | 85 | 9.83 Mbp | 10 | 126.10 Mbp |
| 60 | 131 | 5.79 Mbp | 13 | 110.03 Mbp |
| 70 | 218 | 2.50 Mbp | 17 | 73.79 Mbp |
| 80 | 731 | 0.14 Mbp | 25 | 24.83 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.823x | 2288 | 2.82 Gbp | 1096 | 2.86 Gbp |
NG based on genome size 3.43 Gbp.
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.