Callithrix jacchus

common marmoset


Information

Resource
NCBI Taxonomy Browser NCBI:txid9483

Resource Maternal Assembly Paternal Assembly
GenBank GCA_011078405.1 GCA_011100535.2
ENA GCA_011078405.1 GCA_011100535.2
UCSC Genome Browser GCA_011078405.1 GCA_011100535.2
CC BY-SA 2.0 Luciano Marra (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x191.03 Gbp55.69x91.494 GB
Arima362.92 Gbp105.81x180.263 GB
Bionano530.01 Gbp154.52x0.863 GB
Illumina485.50 Gbp141.54x237.365 GB
PacBio SubReads217.61 Gbp63.44x378.467 GB
Coverage based on genome size 3.43 Gbp.
Last upload on 28 June 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
No primary assembly available.

Individual 1 Alternate Assembly
No alternate assembly available.


Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mCalJac1.MT.20190820.fasta.gz (5 KB)
Individual 1 Merged Trio Assembly
Version assembly_curated from 25 April 2021
mCalJac1.pat.X.cur.20210425.fasta.gz (855 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 35.26 Mbp 1 202.81 Mbp
20 18 24.65 Mbp 3 173.41 Mbp
30 34 18.02 Mbp 5 159.67 Mbp
40 55 14.60 Mbp 7 146.90 Mbp
50 85 9.93 Mbp 10 128.53 Mbp
60 130 5.87 Mbp 13 117.64 Mbp
70 211 3.05 Mbp 16 98.11 Mbp
80 485 0.36 Mbp 21 47.06 Mbp
90 - - - -
100 - - - -
0.834x 2399 2.86 Gbp 1234 2.87 Gbp
NG based on genome size 3.43 Gbp.

Individual 1 Maternal Assembly
Version assembly_curated from 12 February 2020
mCalJac1.mat.cur.20200212.fasta.gz (809 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 23.59 Mbp 1 202.58 Mbp
20 27 17.91 Mbp 3 172.75 Mbp
30 51 11.37 Mbp 5 160.12 Mbp
40 84 8.82 Mbp 7 146.90 Mbp
50 131 6.02 Mbp 10 127.66 Mbp
60 205 3.72 Mbp 13 117.27 Mbp
70 330 1.98 Mbp 16 97.94 Mbp
80 688 0.30 Mbp 21 45.74 Mbp
90 - - - -
100 - - - -
0.816x 1284 2.80 Gbp 216 2.81 Gbp
NG based on genome size 3.43 Gbp.
Individual 1 Paternal Assembly
Version assembly_curated from 25 April 2021
mCalJac1.pat.cur.20210425.fasta.gz (812 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 35.26 Mbp 1 202.81 Mbp
20 18 24.65 Mbp 3 173.41 Mbp
30 34 18.02 Mbp 5 159.67 Mbp
40 55 14.60 Mbp 7 136.97 Mbp
50 85 9.83 Mbp 10 126.10 Mbp
60 131 5.70 Mbp 13 112.97 Mbp
70 220 2.38 Mbp 16 74.70 Mbp
80 - - - -
90 - - - -
100 - - - -
0.792x 2211 2.72 Gbp 1217 2.73 Gbp
NG based on genome size 3.43 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.