Callithrix jacchus
common marmoset
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid9483 |
Resource | Maternal Assembly | Paternal Assembly |
---|---|---|
GenBank | GCA_011078405.1 | GCA_011100535.2 |
ENA | GCA_011078405.1 | GCA_011100535.2 |
UCSC Genome Browser | GCA_011078405.1 | GCA_011100535.2 |
CC BY-SA 2.0 Luciano Marra (flickr)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 191.03 Gbp | 55.69x | 91.494 GB |
Arima | 362.92 Gbp | 105.81x | 180.263 GB |
Bionano | 530.01 Gbp | 154.52x | 0.863 GB |
Illumina | 485.50 Gbp | 141.54x | 237.365 GB |
PacBio SubReads | 217.61 Gbp | 63.44x | 378.467 GB |
Coverage based on genome size 3.43 Gbp.
Last upload on 28 June 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac3/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Callithrix_jacchus/mCalJac1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
No primary assembly available.
No primary assembly available.
Individual 1 Alternate Assembly
No alternate assembly available.
No alternate assembly available.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mCalJac1.MT.20190820.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 20 August 2019
mCalJac1.MT.20190820.fasta.gz (5 KB)
Individual 1 Merged Trio Assembly
Version assembly_curated from 25 April 2021
mCalJac1.pat.X.cur.20210425.fasta.gz (855 MB)
Version assembly_curated from 25 April 2021
mCalJac1.pat.X.cur.20210425.fasta.gz (855 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 35.26 Mbp | 1 | 202.81 Mbp |
20 | 18 | 24.65 Mbp | 3 | 173.41 Mbp |
30 | 34 | 18.02 Mbp | 5 | 159.67 Mbp |
40 | 55 | 14.60 Mbp | 7 | 146.90 Mbp |
50 | 85 | 9.93 Mbp | 10 | 128.53 Mbp |
60 | 130 | 5.87 Mbp | 13 | 117.64 Mbp |
70 | 211 | 3.05 Mbp | 16 | 98.11 Mbp |
80 | 485 | 0.36 Mbp | 21 | 47.06 Mbp |
90 | - | - | - | - |
100 | - | - | - | - |
0.834x | 2399 | 2.86 Gbp | 1234 | 2.87 Gbp |
NG based on genome size 3.43 Gbp.
Individual 1 Maternal Assembly
Version assembly_curated from 12 February 2020
mCalJac1.mat.cur.20200212.fasta.gz (809 MB)
Version assembly_curated from 12 February 2020
mCalJac1.mat.cur.20200212.fasta.gz (809 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 10 | 23.59 Mbp | 1 | 202.58 Mbp |
20 | 27 | 17.91 Mbp | 3 | 172.75 Mbp |
30 | 51 | 11.37 Mbp | 5 | 160.12 Mbp |
40 | 84 | 8.82 Mbp | 7 | 146.90 Mbp |
50 | 131 | 6.02 Mbp | 10 | 127.66 Mbp |
60 | 205 | 3.72 Mbp | 13 | 117.27 Mbp |
70 | 330 | 1.98 Mbp | 16 | 97.94 Mbp |
80 | 688 | 0.30 Mbp | 21 | 45.74 Mbp |
90 | - | - | - | - |
100 | - | - | - | - |
0.816x | 1284 | 2.80 Gbp | 216 | 2.81 Gbp |
NG based on genome size 3.43 Gbp.
Individual 1 Paternal Assembly
Version assembly_curated from 25 April 2021
mCalJac1.pat.cur.20210425.fasta.gz (812 MB)
Version assembly_curated from 25 April 2021
mCalJac1.pat.cur.20210425.fasta.gz (812 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 35.26 Mbp | 1 | 202.81 Mbp |
20 | 18 | 24.65 Mbp | 3 | 173.41 Mbp |
30 | 34 | 18.02 Mbp | 5 | 159.67 Mbp |
40 | 55 | 14.60 Mbp | 7 | 136.97 Mbp |
50 | 85 | 9.83 Mbp | 10 | 126.10 Mbp |
60 | 131 | 5.70 Mbp | 13 | 112.97 Mbp |
70 | 220 | 2.38 Mbp | 16 | 74.70 Mbp |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.792x | 2211 | 2.72 Gbp | 1217 | 2.73 Gbp |
NG based on genome size 3.43 Gbp.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.