Calypte anna
Anna's hummingbird
Information
public domain
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 50.23x | 32.739 GB |
| Arima | 135.89x | 79.418 GB |
| Bionano | 750.98x | 1.035 GB |
| Dovetail Genomics | 90.66x | 58.885 GB |
| PacBio SubReads | 69.02x | 231.725 GB |
| Phase Genomics | 19.26x | 11.507 GB |
Coverage based on genome size 1.12 Gbp.
Last upload on 16 April 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/phase/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/phase/ .
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 26 September 2018
bCalAnn1.pri.cur.20180926.fasta.gz (303 MB)
Version assembly_curated from 26 September 2018
bCalAnn1.pri.cur.20180926.fasta.gz (303 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 2 | 39.66 Mbp | 0 | 197.55 Mbp |
| 20 | 5 | 30.11 Mbp | 1 | 151.34 Mbp |
| 30 | 9 | 22.66 Mbp | 1 | 151.34 Mbp |
| 40 | 15 | 16.29 Mbp | 2 | 114.81 Mbp |
| 50 | 23 | 12.77 Mbp | 4 | 44.75 Mbp |
| 60 | 32 | 9.35 Mbp | 7 | 35.40 Mbp |
| 70 | 50 | 4.55 Mbp | 10 | 25.69 Mbp |
| 80 | 91 | 1.88 Mbp | 16 | 17.70 Mbp |
| 90 | 224 | 0.36 Mbp | 24 | 7.71 Mbp |
| 100 | - | - | - | - |
| 0.935x | 588 | 1.04 Gbp | 159 | 1.06 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 19 October 2018
bCalAnn1.alt.cur.20181019.fasta.gz (279 MB)
Version assembly_curated from 19 October 2018
bCalAnn1.alt.cur.20181019.fasta.gz (279 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 19 | 3.98 Mbp | 19 | 3.98 Mbp |
| 20 | 50 | 3.14 Mbp | 50 | 3.14 Mbp |
| 30 | 91 | 2.34 Mbp | 91 | 2.34 Mbp |
| 40 | 148 | 1.58 Mbp | 148 | 1.58 Mbp |
| 50 | 231 | 1.15 Mbp | 231 | 1.15 Mbp |
| 60 | 355 | 0.73 Mbp | 355 | 0.73 Mbp |
| 70 | 563 | 0.38 Mbp | 563 | 0.38 Mbp |
| 80 | 1273 | 55.26 Kbp | 1273 | 55.32 Kbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.853x | 3809 | 0.95 Gbp | 3803 | 0.95 Gbp |
NG based on genome size 1.12 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_mt_milan from 2 March 2019
bCalAnn1.MT.20190302.fasta.gz (5 KB)
Version assembly_mt_milan from 2 March 2019
bCalAnn1.MT.20190302.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.