Calypte anna

Anna's hummingbird


Information

Resource
NCBI Taxonomy Browser NCBI:txid9244

Resource Primary Assembly Alternate Assembly
GenBank GCA_003957555.2 GCA_003957575.1
ENA GCA_003957555.2 GCA_003957575.1
UCSC Genome Browser GCA_003957555.2 GCA_003957575.1

public domain

Raw Data

Datatype Approximate Coverage Download Size
10x50.23x32.739 GB
Arima135.89x79.418 GB
Bionano750.98x1.035 GB
Dovetail Genomics90.66x58.885 GB
PacBio SubReads69.02x231.725 GB
Phase Genomics19.26x11.507 GB
Coverage based on genome size 1.12 Gbp.
Last upload on 16 April 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Calypte_anna/bCalAnn1/genomic_data/phase/ .

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 26 September 2018
bCalAnn1.pri.cur.20180926.fasta.gz (303 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 39.66 Mbp 0 197.55 Mbp
20 5 30.11 Mbp 1 151.34 Mbp
30 9 22.66 Mbp 1 151.34 Mbp
40 15 16.29 Mbp 2 114.81 Mbp
50 23 12.77 Mbp 4 44.75 Mbp
60 32 9.35 Mbp 7 35.40 Mbp
70 50 4.55 Mbp 10 25.69 Mbp
80 91 1.88 Mbp 16 17.70 Mbp
90 224 0.36 Mbp 24 7.71 Mbp
100 - - - -
0.935x 588 1.04 Gbp 159 1.06 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 19 October 2018
bCalAnn1.alt.cur.20181019.fasta.gz (279 MB)

Contigs Scaffolds
NG LG Len LG Len
10 19 3.98 Mbp 19 3.98 Mbp
20 50 3.14 Mbp 50 3.14 Mbp
30 91 2.34 Mbp 91 2.34 Mbp
40 148 1.58 Mbp 148 1.58 Mbp
50 231 1.15 Mbp 231 1.15 Mbp
60 355 0.73 Mbp 355 0.73 Mbp
70 563 0.38 Mbp 563 0.38 Mbp
80 1273 55.26 Kbp 1273 55.32 Kbp
90 - - - -
100 - - - -
0.853x 3809 0.95 Gbp 3803 0.95 Gbp
NG based on genome size 1.12 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
bCalAnn1.MT.20191002.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.