Caprimulgus europaeus

Eurasian nightjar


Information

Resource
NCBI Taxonomy Browser NCBI:txid111811

Resource Primary Assembly Alternate Assembly
GenBank GCA_907165065.1 GCA_907165095.1
ENA GCA_907165065.1 GCA_907165095.1
UCSC Genome Browser GCA_907165065.1 GCA_907165095.1

CC BY-SA 3.0 Dûrzan Cîrano (wikipedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x129.74 Gbp109.67x79.967 GB
Arima69.75 Gbp58.96x41.798 GB
Bionano1510.70 Gbp1276.94x2.629 GB
PacBio SubReads158.97 Gbp134.38x284.450 GB
Coverage based on genome size 1.18 Gbp.
Last upload on 18 December 2021.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 3 Primary Assembly
Version assembly_curated from 1 April 2021
bCapEur3.pri.cur.20210401.fasta.gz (342 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 92.54 Mbp 0 126.32 Mbp
20 2 64.62 Mbp 1 125.37 Mbp
30 4 58.89 Mbp 3 83.32 Mbp
40 7 43.91 Mbp 4 82.63 Mbp
50 10 30.62 Mbp 5 82.61 Mbp
60 14 25.73 Mbp 7 60.47 Mbp
70 19 17.93 Mbp 10 43.00 Mbp
80 28 10.47 Mbp 13 22.81 Mbp
90 46 4.18 Mbp 19 15.70 Mbp
100 - - - -
0.996x 274 1.18 Gbp 121 1.18 Gbp
NG based on genome size 1.18 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 1 April 2021
bCapEur3.alt.cur.20210401.fasta.gz (306 MB)

Contigs Scaffolds
NG LG Len LG Len
10 40 2.12 Mbp 40 2.12 Mbp
20 107 1.50 Mbp 107 1.50 Mbp
30 199 1.15 Mbp 199 1.15 Mbp
40 317 0.87 Mbp 317 0.87 Mbp
50 478 0.62 Mbp 478 0.62 Mbp
60 698 0.47 Mbp 698 0.47 Mbp
70 999 0.32 Mbp 999 0.32 Mbp
80 1464 0.20 Mbp 1464 0.20 Mbp
90 - - - -
100 - - - -
0.889x 2527 1.05 Gbp 2502 1.05 Gbp
NG based on genome size 1.18 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.