Caprimulgus europaeus
Eurasian nightjar
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid111811 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_907165065.1 | GCA_907165095.1 |
ENA | GCA_907165065.1 | GCA_907165095.1 |
UCSC Genome Browser | GCA_907165065.1 | GCA_907165095.1 |
CC BY-SA 3.0 Dûrzan Cîrano (wikipedia)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 129.74 Gbp | 109.67x | 79.967 GB |
Arima | 69.75 Gbp | 58.96x | 41.798 GB |
Bionano | 1510.70 Gbp | 1276.94x | 2.629 GB |
PacBio SubReads | 158.97 Gbp | 134.38x | 284.450 GB |
Coverage based on genome size 1.18 Gbp.
Last upload on 18 December 2021.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Caprimulgus_europaeus/bCapEur3/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 1 April 2021
bCapEur3.pri.cur.20210401.fasta.gz (342 MB)
Version assembly_curated from 1 April 2021
bCapEur3.pri.cur.20210401.fasta.gz (342 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 92.54 Mbp | 0 | 126.32 Mbp |
20 | 2 | 64.62 Mbp | 1 | 125.37 Mbp |
30 | 4 | 58.89 Mbp | 3 | 83.32 Mbp |
40 | 7 | 43.91 Mbp | 4 | 82.63 Mbp |
50 | 10 | 30.62 Mbp | 5 | 82.61 Mbp |
60 | 14 | 25.73 Mbp | 7 | 60.47 Mbp |
70 | 19 | 17.93 Mbp | 10 | 43.00 Mbp |
80 | 28 | 10.47 Mbp | 13 | 22.81 Mbp |
90 | 46 | 4.18 Mbp | 19 | 15.70 Mbp |
100 | - | - | - | - |
0.996x | 274 | 1.18 Gbp | 121 | 1.18 Gbp |
NG based on genome size 1.18 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 1 April 2021
bCapEur3.alt.cur.20210401.fasta.gz (306 MB)
Version assembly_curated from 1 April 2021
bCapEur3.alt.cur.20210401.fasta.gz (306 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 40 | 2.12 Mbp | 40 | 2.12 Mbp |
20 | 107 | 1.50 Mbp | 107 | 1.50 Mbp |
30 | 199 | 1.15 Mbp | 199 | 1.15 Mbp |
40 | 317 | 0.87 Mbp | 317 | 0.87 Mbp |
50 | 478 | 0.62 Mbp | 478 | 0.62 Mbp |
60 | 698 | 0.47 Mbp | 698 | 0.47 Mbp |
70 | 999 | 0.32 Mbp | 999 | 0.32 Mbp |
80 | 1464 | 0.20 Mbp | 1464 | 0.20 Mbp |
90 | - | - | - | - |
100 | - | - | - | - |
0.889x | 2527 | 1.05 Gbp | 2502 | 1.05 Gbp |
NG based on genome size 1.18 Gbp.
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.