Carcharodon carcharias

great white shark


Information

Resource
NCBI Taxonomy Browser NCBI:txid13397

Resource Primary Assembly Alternate Assembly
GenBank GCA_017639515.1 GCA_017639455.1
ENA GCA_017639515.1 GCA_017639455.1
UCSC Genome Browser GCA_017639515.1 GCA_017639455.1

CC BY-SA 3.0 Terry Goss (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x272.74 Gbp60.61x132.949 GB
Arima471.53 Gbp104.78x284.496 GB
Bionano1100.73 Gbp244.61x1.609 GB
Illumina308.87 Gbp68.64x144.347 GB
PacBio SubReads300.79 Gbp66.84x530.449 GB
Coverage based on genome size 4.50 Gbp.
Last upload on 13 July 2020.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 2 Primary Assembly
Version assembly_curated from 5 February 2021
sCarCar2.pri.cur.20210205.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 11 31.74 Mbp 1 239.77 Mbp
20 29 19.42 Mbp 3 205.64 Mbp
30 57 12.96 Mbp 5 199.47 Mbp
40 100 9.05 Mbp 8 173.48 Mbp
50 162 5.93 Mbp 11 153.34 Mbp
60 258 3.77 Mbp 14 137.46 Mbp
70 416 2.13 Mbp 17 118.54 Mbp
80 738 0.95 Mbp 22 54.60 Mbp
90 1536 0.31 Mbp 37 9.48 Mbp
100 - - - -
0.948x 3363 4.27 Gbp 718 4.29 Gbp
NG based on genome size 4.50 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 5 February 2021
sCarCar2.alt.cur.20210205.fasta.gz (2 MB)

Contigs Scaffolds
NG LG Len LG Len
10 - - - -
20 - - - -
30 - - - -
40 - - - -
50 - - - -
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.001x 67 6.20 Mbp 39 6.21 Mbp
NG based on genome size 4.50 Gbp.

Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
sCarCar2.MT.20191004.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.