Carcharodon carcharias
great white shark
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid13397 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_017639515.1 | GCA_017639455.1 |
| ENA | GCA_017639515.1 | GCA_017639455.1 |
| UCSC Genome Browser | GCA_017639515.1 | GCA_017639455.1 |
CC BY-SA 3.0 Terry Goss (wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 272.74 Gbp | 60.61x | 132.949 GB |
| Arima | 471.53 Gbp | 104.78x | 284.496 GB |
| Bionano | 1100.73 Gbp | 244.61x | 1.609 GB |
| Illumina | 308.87 Gbp | 68.64x | 144.347 GB |
| PacBio SubReads | 300.79 Gbp | 66.84x | 530.449 GB |
Coverage based on genome size 4.50 Gbp.
Last upload on 13 July 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/illumina/ .
aws s3 --no-sign-request sync s3://genomeark/species/Carcharodon_carcharias/sCarCar2/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 2 Primary Assembly
Version assembly_curated from 5 February 2021
sCarCar2.pri.cur.20210205.fasta.gz (1 GB)
Version assembly_curated from 5 February 2021
sCarCar2.pri.cur.20210205.fasta.gz (1 GB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 11 | 31.74 Mbp | 1 | 239.77 Mbp |
| 20 | 29 | 19.42 Mbp | 3 | 205.64 Mbp |
| 30 | 57 | 12.96 Mbp | 5 | 199.47 Mbp |
| 40 | 100 | 9.05 Mbp | 8 | 173.48 Mbp |
| 50 | 162 | 5.93 Mbp | 11 | 153.34 Mbp |
| 60 | 258 | 3.77 Mbp | 14 | 137.46 Mbp |
| 70 | 416 | 2.13 Mbp | 17 | 118.54 Mbp |
| 80 | 738 | 0.95 Mbp | 22 | 54.60 Mbp |
| 90 | 1536 | 0.31 Mbp | 37 | 9.48 Mbp |
| 100 | - | - | - | - |
| 0.948x | 3363 | 4.27 Gbp | 718 | 4.29 Gbp |
NG based on genome size 4.50 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 5 February 2021
sCarCar2.alt.cur.20210205.fasta.gz (2 MB)
Version assembly_curated from 5 February 2021
sCarCar2.alt.cur.20210205.fasta.gz (2 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | - | - | - | - |
| 20 | - | - | - | - |
| 30 | - | - | - | - |
| 40 | - | - | - | - |
| 50 | - | - | - | - |
| 60 | - | - | - | - |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.001x | 67 | 6.20 Mbp | 39 | 6.21 Mbp |
NG based on genome size 4.50 Gbp.
Individual 2 Mitochondrial Assembly
Version assembly_MT_rockefeller from 4 October 2019
sCarCar2.MT.20191004.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 4 October 2019
sCarCar2.MT.20191004.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.