Catharus ustulatus
Swainson's thrush
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid91951 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_009819885.2 | GCA_009819505.2 |
| ENA | GCA_009819885.2 | GCA_009819505.2 |
| UCSC Genome Browser | GCA_009819885.2 | GCA_009819505.2 |
CC BY 2.0 CheepShot (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 126.28 Gbp | 84.75x | 65.050 GB |
| Arima | 107.97 Gbp | 72.47x | 66.941 GB |
| Bionano | 273.82 Gbp | 183.77x | 0.405 GB |
| PacBio SubReads | 90.27 Gbp | 60.58x | 154.793 GB |
Coverage based on genome size 1.49 Gbp.
Last upload on 10 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 6 August 2020
bCatUst1.pri.cur.20200806.fasta.gz (322 MB)
Version assembly_curated from 6 August 2020
bCatUst1.pri.cur.20200806.fasta.gz (322 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 11 | 10.63 Mbp | 0 | 165.77 Mbp |
| 20 | 27 | 7.84 Mbp | 2 | 120.19 Mbp |
| 30 | 48 | 6.11 Mbp | 3 | 77.03 Mbp |
| 40 | 77 | 4.67 Mbp | 5 | 68.46 Mbp |
| 50 | 117 | 3.16 Mbp | 8 | 36.55 Mbp |
| 60 | 171 | 2.37 Mbp | 13 | 21.57 Mbp |
| 70 | 256 | 1.16 Mbp | 24 | 8.46 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.751x | 589 | 1.12 Gbp | 160 | 1.13 Gbp |
NG based on genome size 1.49 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 6 August 2020
bCatUst1.alt.cur.20200806.fasta.gz (327 MB)
Version assembly_curated from 6 August 2020
bCatUst1.alt.cur.20200806.fasta.gz (327 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 26 | 4.06 Mbp | 26 | 4.06 Mbp |
| 20 | 74 | 2.59 Mbp | 74 | 2.59 Mbp |
| 30 | 140 | 1.94 Mbp | 140 | 1.94 Mbp |
| 40 | 231 | 1.38 Mbp | 231 | 1.38 Mbp |
| 50 | 368 | 0.82 Mbp | 367 | 0.84 Mbp |
| 60 | 621 | 0.38 Mbp | 620 | 0.38 Mbp |
| 70 | 1684 | 76.65 Kbp | 1676 | 76.69 Kbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.757x | 3614 | 1.13 Gbp | 3601 | 1.13 Gbp |
NG based on genome size 1.49 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bCatUst1.MT.20190918.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 18 September 2019
bCatUst1.MT.20190918.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.