Catharus ustulatus

Swainson's thrush


Information

CC BY 2.0 CheepShot (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x84.75x65.050 GB
Arima72.47x66.941 GB
Bionano183.77x0.405 GB
PacBio ScrapsN/A148.327 GB
PacBio SubReads60.58x154.793 GB
Coverage based on genome size 1.49 Gbp.
Last upload on 26 April 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_vgp_standard_1.5 from 4 July 2019
bCatUst1.pri.asm.20190704.fasta.gz (329 MB)

Contigs Scaffolds
NG LG Len LG Len
10 10 10.66 Mbp 0 165.91 Mbp
20 26 7.95 Mbp 2 108.60 Mbp
30 47 6.12 Mbp 3 79.15 Mbp
40 76 4.68 Mbp 5 66.36 Mbp
50 114 3.35 Mbp 8 38.12 Mbp
60 165 2.54 Mbp 14 20.71 Mbp
70 241 1.43 Mbp 25 9.91 Mbp
80 - - - -
90 - - - -
100 - - - -
0.765x 592 1.14 Gbp 193 1.16 Gbp
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.5 from 4 July 2019
bCatUst1.alt.asm.20190704.fasta.gz (321 MB)

Contigs Scaffolds
NG LG Len LG Len
10 26 4.06 Mbp 26 4.06 Mbp
20 74 2.59 Mbp 74 2.59 Mbp
30 140 1.93 Mbp 140 1.93 Mbp
40 232 1.37 Mbp 232 1.37 Mbp
50 371 0.81 Mbp 371 0.81 Mbp
60 642 0.32 Mbp 642 0.32 Mbp
70 1930 65.91 Kbp 1930 65.91 Kbp
80 - - - -
90 - - - -
100 - - - -
0.743x 3548 1.11 Gbp 3548 1.11 Gbp
NG based on genome size 1.49 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.