Catharus ustulatus

Swainson's thrush


Information

NCBI Taxonomy Browser
CC BY 2.0 CheepShot (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x84.75x65.050 GB
Arima72.47x66.941 GB
Bionano183.77x0.405 GB
PacBio SubReads60.58x154.793 GB
Coverage based on genome size 1.49 Gbp.
Last upload on 10 September 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Catharus_ustulatus/bCatUst1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 24 September 2019
bCatUst1.pri.cur.20190924.fasta.gz (322 MB)

Contigs Scaffolds
NG LG Len LG Len
10 11 10.63 Mbp 0 165.77 Mbp
20 27 7.84 Mbp 2 120.19 Mbp
30 48 6.11 Mbp 3 77.03 Mbp
40 77 4.67 Mbp 5 63.53 Mbp
50 117 3.16 Mbp 8 36.55 Mbp
60 171 2.37 Mbp 14 21.57 Mbp
70 256 1.16 Mbp 25 8.46 Mbp
80 - - - -
90 - - - -
100 - - - -
0.751x 589 1.12 Gbp 161 1.13 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 24 September 2019
bCatUst1.alt.cur.20190924.fasta.gz (327 MB)

Contigs Scaffolds
NG LG Len LG Len
10 26 4.06 Mbp 26 4.06 Mbp
20 74 2.59 Mbp 74 2.59 Mbp
30 140 1.94 Mbp 140 1.94 Mbp
40 231 1.38 Mbp 231 1.38 Mbp
50 368 0.82 Mbp 367 0.84 Mbp
60 621 0.38 Mbp 620 0.38 Mbp
70 1684 76.65 Kbp 1676 76.69 Kbp
80 - - - -
90 - - - -
100 - - - -
0.757x 3614 1.13 Gbp 3601 1.13 Gbp
NG based on genome size 1.49 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bCatUst1.MT.20190918.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.