Catharus ustulatus

Swainson's thrush


Information

Resource
NCBI Taxonomy Browser NCBI:txid91951

Resource Primary Assembly Alternate Assembly
GenBank GCA_009819885.2 GCA_009819505.2
ENA GCA_009819885.2 GCA_009819505.2
UCSC Genome Browser GCA_009819885.2 GCA_009819505.2

CC BY 2.0 CheepShot (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x126.28 Gbp84.75x65.050 GB
Arima107.97 Gbp72.47x66.941 GB
Bionano273.82 Gbp183.77x0.405 GB
PacBio SubReads90.27 Gbp60.58x154.793 GB
Coverage based on genome size 1.49 Gbp.
Last upload on 10 September 2019.
Download each datatype using the AWS Command Line Interface:

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 6 August 2020
bCatUst1.pri.cur.20200806.fasta.gz (322 MB)

Contigs Scaffolds
NG LG Len LG Len
10 11 10.63 Mbp 0 165.77 Mbp
20 27 7.84 Mbp 2 120.19 Mbp
30 48 6.11 Mbp 3 77.03 Mbp
40 77 4.67 Mbp 5 68.46 Mbp
50 117 3.16 Mbp 8 36.55 Mbp
60 171 2.37 Mbp 13 21.57 Mbp
70 256 1.16 Mbp 24 8.46 Mbp
80 - - - -
90 - - - -
100 - - - -
0.751x 589 1.12 Gbp 160 1.13 Gbp
NG based on genome size 1.49 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 6 August 2020
bCatUst1.alt.cur.20200806.fasta.gz (327 MB)

Contigs Scaffolds
NG LG Len LG Len
10 26 4.06 Mbp 26 4.06 Mbp
20 74 2.59 Mbp 74 2.59 Mbp
30 140 1.94 Mbp 140 1.94 Mbp
40 231 1.38 Mbp 231 1.38 Mbp
50 368 0.82 Mbp 367 0.84 Mbp
60 621 0.38 Mbp 620 0.38 Mbp
70 1684 76.65 Kbp 1676 76.69 Kbp
80 - - - -
90 - - - -
100 - - - -
0.757x 3614 1.13 Gbp 3601 1.13 Gbp
NG based on genome size 1.49 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 18 September 2019
bCatUst1.MT.20190918.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.