Chelonia mydas
Green sea turtle
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid8469 |
CC BY-SA 3.0 Christoph Schuetzenhofer (wikimedia)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | N/A | 74.602 GB |
| Arima | N/A | 90.255 GB |
| Bionano | N/A | 1.187 GB |
| PacBio SubReads | N/A | 249.509 GB |
No genome size estimate available.
Last upload on 28 August 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 11 August 2020
rCheMyd1.pri.cur.20200811.fasta.gz (623 MB)
Version assembly_curated from 11 August 2020
rCheMyd1.pri.cur.20200811.fasta.gz (623 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 2 | 98.25 Mbp | 0 | 348.27 Mbp |
| 20 | 4 | 79.44 Mbp | 1 | 262.51 Mbp |
| 30 | 7 | 62.58 Mbp | 2 | 204.12 Mbp |
| 40 | 11 | 45.40 Mbp | 3 | 142.32 Mbp |
| 50 | 16 | 39.42 Mbp | 4 | 134.43 Mbp |
| 60 | 22 | 33.72 Mbp | 6 | 123.87 Mbp |
| 70 | 29 | 26.64 Mbp | 8 | 101.62 Mbp |
| 80 | 39 | 17.72 Mbp | 10 | 79.52 Mbp |
| 90 | 55 | 8.65 Mbp | 16 | 25.20 Mbp |
| 100 | 391 | 71 bp | 97 | 3.06 Kbp |
| 1.000x | 392 | 2.12 Gbp | 98 | 2.13 Gbp |
Individual 1 Alternate Assembly
Version assembly_curated from 11 August 2020
rCheMyd1.alt.cur.20200811.fasta.gz (562 MB)
Version assembly_curated from 11 August 2020
rCheMyd1.alt.cur.20200811.fasta.gz (562 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 104 | 1.41 Mbp | 104 | 1.41 Mbp |
| 20 | 265 | 1.00 Mbp | 265 | 1.00 Mbp |
| 30 | 483 | 0.77 Mbp | 482 | 0.77 Mbp |
| 40 | 766 | 0.59 Mbp | 765 | 0.59 Mbp |
| 50 | 1133 | 0.45 Mbp | 1131 | 0.46 Mbp |
| 60 | 1612 | 0.35 Mbp | 1608 | 0.35 Mbp |
| 70 | 2261 | 0.25 Mbp | 2254 | 0.25 Mbp |
| 80 | 3157 | 0.18 Mbp | 3144 | 0.18 Mbp |
| 90 | 4412 | 0.13 Mbp | 4387 | 0.13 Mbp |
| 100 | 6796 | 220 bp | 6736 | 220 bp |
| 1.000x | 6797 | 1.90 Gbp | 6737 | 1.90 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.