Chelonia mydas
Green sea turtle
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid8469 |
CC BY-SA 3.0 Christoph Schuetzenhofer (wikimedia)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | N/A | 74.602 GB |
| Arima | N/A | 90.255 GB |
| Bionano | N/A | 1.187 GB |
| PacBio SubReads | N/A | 249.509 GB |
No genome size estimate available.
Last upload on 28 August 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Chelonia_mydas/rCheMyd1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.6 from 17 April 2020
rCheMyd1.pri.asm.20200417.fasta.gz (603 MB)
Version assembly_vgp_standard_1.6 from 17 April 2020
rCheMyd1.pri.asm.20200417.fasta.gz (603 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 1 | 107.68 Mbp | 0 | 343.34 Mbp |
| 20 | 3 | 98.25 Mbp | 1 | 262.86 Mbp |
| 30 | 6 | 65.80 Mbp | 2 | 199.69 Mbp |
| 40 | 10 | 55.85 Mbp | 3 | 140.08 Mbp |
| 50 | 14 | 45.43 Mbp | 5 | 129.90 Mbp |
| 60 | 19 | 39.42 Mbp | 6 | 124.08 Mbp |
| 70 | 25 | 33.32 Mbp | 8 | 101.67 Mbp |
| 80 | 33 | 20.66 Mbp | 11 | 44.48 Mbp |
| 90 | 47 | 10.38 Mbp | 18 | 19.77 Mbp |
| 100 | 393 | 71 bp | 128 | 3.06 Kbp |
| 1.000x | 394 | 2.13 Gbp | 129 | 2.17 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.6 from 17 April 2020
rCheMyd1.alt.asm.20200417.fasta.gz (544 MB)
Version assembly_vgp_standard_1.6 from 17 April 2020
rCheMyd1.alt.asm.20200417.fasta.gz (544 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 103 | 1.41 Mbp | 103 | 1.41 Mbp |
| 20 | 265 | 1.00 Mbp | 265 | 1.00 Mbp |
| 30 | 481 | 0.77 Mbp | 481 | 0.77 Mbp |
| 40 | 764 | 0.59 Mbp | 764 | 0.59 Mbp |
| 50 | 1129 | 0.46 Mbp | 1129 | 0.46 Mbp |
| 60 | 1606 | 0.35 Mbp | 1605 | 0.35 Mbp |
| 70 | 2252 | 0.25 Mbp | 2247 | 0.25 Mbp |
| 80 | 3143 | 0.18 Mbp | 3134 | 0.18 Mbp |
| 90 | 4391 | 0.13 Mbp | 4372 | 0.13 Mbp |
| 100 | 6741 | 220 bp | 6700 | 220 bp |
| 1.000x | 6742 | 1.89 Gbp | 6701 | 1.89 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.