Choloepus didactylus
southern two-toed sloth
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid27675 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_015220235.1 | GCA_015220265.1 |
| ENA | GCA_015220235.1 | GCA_015220265.1 |
| UCSC Genome Browser | GCA_015220235.1 | GCA_015220265.1 |
CC BY-SA 3.0 Hans Hillewaert (wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 336.88 Gbp | 99.08x | 159.933 GB |
| Arima | 301.58 Gbp | 88.70x | 153.732 GB |
| Bionano | 854.82 Gbp | 251.42x | 1.633 GB |
| PacBio SubReads | 193.25 Gbp | 56.84x | 339.455 GB |
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.pri.asm.20200914.fasta.gz (915 MB)
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.pri.asm.20200914.fasta.gz (915 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 6 | 49.21 Mbp | 1 | 248.08 Mbp |
| 20 | 13 | 38.79 Mbp | 2 | 223.23 Mbp |
| 30 | 23 | 32.32 Mbp | 4 | 193.84 Mbp |
| 40 | 35 | 24.60 Mbp | 6 | 156.66 Mbp |
| 50 | 51 | 19.04 Mbp | 8 | 146.18 Mbp |
| 60 | 75 | 10.92 Mbp | 11 | 102.98 Mbp |
| 70 | 117 | 5.42 Mbp | 14 | 90.81 Mbp |
| 80 | 215 | 2.09 Mbp | 18 | 77.03 Mbp |
| 90 | 642 | 0.28 Mbp | 25 | 26.63 Mbp |
| 100 | - | - | - | - |
| 0.922x | 1385 | 3.13 Gbp | 145 | 3.21 Gbp |
NG based on genome size 3.40 Gbp.
Individual 1 Alternate Assembly
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.alt.asm.20200914.fasta.gz (942 MB)
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.alt.asm.20200914.fasta.gz (942 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 171 | 1.57 Mbp | 171 | 1.57 Mbp |
| 20 | 431 | 1.13 Mbp | 431 | 1.13 Mbp |
| 30 | 782 | 0.85 Mbp | 782 | 0.85 Mbp |
| 40 | 1248 | 0.63 Mbp | 1248 | 0.63 Mbp |
| 50 | 1880 | 0.46 Mbp | 1880 | 0.46 Mbp |
| 60 | 2773 | 0.31 Mbp | 2770 | 0.31 Mbp |
| 70 | 4103 | 0.21 Mbp | 4096 | 0.21 Mbp |
| 80 | 6073 | 0.14 Mbp | 6060 | 0.14 Mbp |
| 90 | 9338 | 73.00 Kbp | 9316 | 73.22 Kbp |
| 100 | - | - | - | - |
| 0.935x | 12050 | 3.18 Gbp | 11980 | 3.18 Gbp |
NG based on genome size 3.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.