Choloepus didactylus
southern two-toed sloth
Information
CC BY-SA 3.0 Hans Hillewaert (wikimedia)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | 99.08x | 159.933 GB |
| Arima | 88.70x | 153.732 GB |
| Bionano | 251.42x | 1.633 GB |
| PacBio Scraps | N/A | 1013.777 GB |
| PacBio SubReads | 56.84x | 339.455 GB |
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_berlin_vgp_1.5 from 21 June 2019
mchoDid1.pri.asm.20190621.fasta.gz (979 MB)
Version assembly_berlin_vgp_1.5 from 21 June 2019
mchoDid1.pri.asm.20190621.fasta.gz (979 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 9 | 24.02 Mbp | 1 | 279.76 Mbp |
| 20 | 25 | 17.69 Mbp | 2 | 270.73 Mbp |
| 30 | 47 | 13.98 Mbp | 3 | 194.55 Mbp |
| 40 | 75 | 10.91 Mbp | 5 | 171.39 Mbp |
| 50 | 109 | 9.35 Mbp | 7 | 163.78 Mbp |
| 60 | 150 | 7.01 Mbp | 10 | 116.91 Mbp |
| 70 | 210 | 4.71 Mbp | 13 | 91.01 Mbp |
| 80 | 313 | 2.54 Mbp | 17 | 70.08 Mbp |
| 90 | 531 | 0.99 Mbp | 22 | 60.15 Mbp |
| 100 | - | - | 35 | 10.86 Mbp |
| 0.987x | 1521 | 3.35 Gbp | 247 | 3.61 Gbp |
Individual 1 Alternate Assembly
Version assembly_berlin_vgp_1.5 from 21 June 2019
mChoDid1.alt.asm.20190621.fasta.gz (1006 MB)
Version assembly_berlin_vgp_1.5 from 21 June 2019
mChoDid1.alt.asm.20190621.fasta.gz (1006 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 171 | 1.59 Mbp | 171 | 1.59 Mbp |
| 20 | 429 | 1.14 Mbp | 429 | 1.14 Mbp |
| 30 | 778 | 0.86 Mbp | 778 | 0.86 Mbp |
| 40 | 1239 | 0.64 Mbp | 1238 | 0.64 Mbp |
| 50 | 1861 | 0.47 Mbp | 1859 | 0.47 Mbp |
| 60 | 2724 | 0.33 Mbp | 2721 | 0.33 Mbp |
| 70 | 3981 | 0.23 Mbp | 3976 | 0.23 Mbp |
| 80 | 5750 | 0.16 Mbp | 5743 | 0.16 Mbp |
| 90 | 8284 | 0.11 Mbp | 8275 | 0.11 Mbp |
| 100 | 13237 | 24.41 Kbp | 13226 | 24.53 Kbp |
| 1.003x | 13803 | 3.41 Gbp | 13773 | 3.41 Gbp |
NG based on genome size 3.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.