Choloepus didactylus

southern two-toed sloth


Information

Resource
NCBI Taxonomy Browser NCBI:txid27675

Resource Primary Assembly Alternate Assembly
GenBank GCA_015220235.1 GCA_015220265.1
ENA GCA_015220235.1 GCA_015220265.1
UCSC Genome Browser GCA_015220235.1 GCA_015220265.1

CC BY-SA 3.0 Hans Hillewaert (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x336.88 Gbp99.08x159.933 GB
Arima301.58 Gbp88.70x153.732 GB
Bionano854.82 Gbp251.42x1.633 GB
PacBio SubReads193.25 Gbp56.84x339.455 GB
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.pri.asm.20200914.fasta.gz (915 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 49.21 Mbp 1 248.08 Mbp
20 13 38.79 Mbp 2 223.23 Mbp
30 23 32.32 Mbp 4 193.84 Mbp
40 35 24.60 Mbp 6 156.66 Mbp
50 51 19.04 Mbp 8 146.18 Mbp
60 75 10.92 Mbp 11 102.98 Mbp
70 117 5.42 Mbp 14 90.81 Mbp
80 215 2.09 Mbp 18 77.03 Mbp
90 642 0.28 Mbp 25 26.63 Mbp
100 - - - -
0.922x 1385 3.13 Gbp 145 3.21 Gbp
Individual 1 Alternate Assembly
Version assembly_berlinSanger_vgp_1.6 from 14 September 2020
mChoDid1.alt.asm.20200914.fasta.gz (942 MB)

Contigs Scaffolds
NG LG Len LG Len
10 171 1.57 Mbp 171 1.57 Mbp
20 431 1.13 Mbp 431 1.13 Mbp
30 782 0.85 Mbp 782 0.85 Mbp
40 1248 0.63 Mbp 1248 0.63 Mbp
50 1880 0.46 Mbp 1880 0.46 Mbp
60 2773 0.31 Mbp 2770 0.31 Mbp
70 4103 0.21 Mbp 4096 0.21 Mbp
80 6073 0.14 Mbp 6060 0.14 Mbp
90 9338 73.00 Kbp 9316 73.22 Kbp
100 - - - -
0.935x 12050 3.18 Gbp 11980 3.18 Gbp
NG based on genome size 3.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.