Choloepus didactylus

southern two-toed sloth


Information

NCBI Taxonomy Browser
CC BY-SA 3.0 Hans Hillewaert (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10x99.08x159.933 GB
Arima88.70x153.732 GB
Bionano251.42x1.633 GB
PacBio SubReads56.84x339.455 GB
Coverage based on genome size 3.40 Gbp.
Last upload on 11 January 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Choloepus_didactylus/mChoDid1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_berlin_vgp_1.6 from 6 September 2019
mChoDid1.pri.asm.20190906.fasta.gz (991 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 43.75 Mbp 1 255.91 Mbp
20 15 31.44 Mbp 2 247.27 Mbp
30 27 25.47 Mbp 4 192.26 Mbp
40 43 19.25 Mbp 6 171.93 Mbp
50 64 12.86 Mbp 8 161.03 Mbp
60 93 10.54 Mbp 10 133.47 Mbp
70 132 6.72 Mbp 13 96.46 Mbp
80 199 3.49 Mbp 16 85.49 Mbp
90 354 1.38 Mbp 21 55.51 Mbp
100 1105 0.11 Mbp 36 9.00 Mbp
1.007x 1602 3.42 Gbp 281 3.61 Gbp
Individual 1 Alternate Assembly
Version assembly_berlin_vgp_1.6 from 6 September 2019
mChoDid1.alt.asm.20190906.fasta.gz (941 MB)

Contigs Scaffolds
NG LG Len LG Len
10 171 1.57 Mbp 171 1.57 Mbp
20 431 1.13 Mbp 431 1.13 Mbp
30 782 0.85 Mbp 782 0.85 Mbp
40 1248 0.63 Mbp 1248 0.63 Mbp
50 1880 0.46 Mbp 1880 0.46 Mbp
60 2773 0.31 Mbp 2770 0.31 Mbp
70 4103 0.21 Mbp 4097 0.21 Mbp
80 6074 0.14 Mbp 6064 0.14 Mbp
90 9347 72.77 Kbp 9330 72.90 Kbp
100 - - - -
0.935x 12033 3.18 Gbp 11972 3.18 Gbp
NG based on genome size 3.40 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 20 August 2019
mChoDid1.MT.20190820.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.