Ciconia maguari

maguari stork


Information

Resource
NCBI Taxonomy Browser NCBI:txid52777

Resource Primary Assembly Alternate Assembly
GenBank GCA_017639555.1 GCA_017639665.1
ENA GCA_017639555.1 GCA_017639665.1
UCSC Genome Browser GCA_017639555.1 GCA_017639665.1

CC BY-NC-SA 2.0 Lip Kee (flickr)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x154.98 Gbp154.98x78.198 GB
Arima116.03 Gbp116.03x65.246 GB
Bionano806.51 Gbp806.51x1.395 GB
PacBio SubReads88.32 Gbp88.32x154.494 GB
Coverage based on genome size 1.00 Gbp.
Last upload on 3 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 15 July 2020
bCicMag1.pri.cur.20200715.fasta.gz (358 MB)

Contigs Scaffolds
NG LG Len LG Len
10 1 54.29 Mbp 0 220.37 Mbp
20 3 43.90 Mbp 0 220.37 Mbp
30 6 32.95 Mbp 1 169.11 Mbp
40 9 29.67 Mbp 2 128.64 Mbp
50 13 24.94 Mbp 2 128.64 Mbp
60 17 23.76 Mbp 3 87.15 Mbp
70 22 16.21 Mbp 5 72.61 Mbp
80 29 13.21 Mbp 6 67.88 Mbp
90 37 11.21 Mbp 8 46.75 Mbp
100 50 6.26 Mbp 10 25.27 Mbp
1.217x 384 1.22 Gbp 152 1.24 Gbp
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 July 2020
bCicMag1.alt.cur.20200715.fasta.gz (287 MB)

Contigs Scaffolds
NG LG Len LG Len
10 77 0.94 Mbp 77 0.94 Mbp
20 205 0.66 Mbp 205 0.66 Mbp
30 376 0.52 Mbp 376 0.52 Mbp
40 592 0.41 Mbp 592 0.41 Mbp
50 862 0.33 Mbp 862 0.33 Mbp
60 1195 0.27 Mbp 1195 0.27 Mbp
70 1613 0.21 Mbp 1613 0.21 Mbp
80 2167 0.15 Mbp 2167 0.15 Mbp
90 3012 87.56 Kbp 3012 87.56 Kbp
100 - - - -
0.968x 4283 0.97 Gbp 4278 0.97 Gbp
NG based on genome size 1.00 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 26 February 2020
bCicMag1.MT.20200226.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.