Ciconia_maguari

Resource
NCBI Taxonomy Browser	NCBI:txid52777

Datatype	Approximate Coverage	Download Size
10x	154.98x	78.198 GB
Arima	116.03x	65.246 GB
Bionano	806.51x	1.395 GB
PacBio SubReads	88.32x	154.494 GB

Coverage based on genome size 1.00 Gbp.

Last upload on 3 March 2020.

Download each datatype using the AWS Command Line Interface:

aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Individual 1 Primary Assembly
Version assembly_curated from 15 July 2020
bCicMag1.pri.cur.20200715.fasta.gz (358 MB)

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	1	54.29 Mbp	0	220.37 Mbp
20	3	43.90 Mbp	0	220.37 Mbp
30	6	32.95 Mbp	1	169.11 Mbp
40	9	29.67 Mbp	2	128.64 Mbp
50	13	24.94 Mbp	2	128.64 Mbp
60	17	23.76 Mbp	3	87.15 Mbp
70	22	16.21 Mbp	5	72.61 Mbp
80	29	13.21 Mbp	6	67.88 Mbp
90	37	11.21 Mbp	8	46.75 Mbp
100	50	6.26 Mbp	10	25.27 Mbp
1.217x	384	1.22 Gbp	152	1.24 Gbp

Individual 1 Alternate Assembly
Version assembly_curated from 15 July 2020
bCicMag1.alt.cur.20200715.fasta.gz (287 MB)

	Contigs		Scaffolds
NG	LG	Len	LG	Len
10	77	0.94 Mbp	77	0.94 Mbp
20	205	0.66 Mbp	205	0.66 Mbp
30	376	0.52 Mbp	376	0.52 Mbp
40	592	0.41 Mbp	592	0.41 Mbp
50	862	0.33 Mbp	862	0.33 Mbp
60	1195	0.27 Mbp	1195	0.27 Mbp
70	1613	0.21 Mbp	1613	0.21 Mbp
80	2167	0.15 Mbp	2167	0.15 Mbp
90	3012	87.56 Kbp	3012	87.56 Kbp
100	-	-	-	-
0.968x	4283	0.97 Gbp	4278	0.97 Gbp

NG based on genome size 1.00 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 26 February 2020
bCicMag1.MT.20200226.fasta.gz (5 KB)

GenomeArk

Ciconia maguari

maguari stork

Information

Raw Data

Assemblies

Data Use Policy