Ciconia maguari
maguari stork
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid52777 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_017639555.1 | GCA_017639665.1 |
ENA | GCA_017639555.1 | GCA_017639665.1 |
UCSC Genome Browser | GCA_017639555.1 | GCA_017639665.1 |
CC BY-NC-SA 2.0 Lip Kee (flickr)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 154.98 Gbp | 154.98x | 78.198 GB |
Arima | 116.03 Gbp | 116.03x | 65.246 GB |
Bionano | 806.51 Gbp | 806.51x | 1.395 GB |
PacBio SubReads | 88.32 Gbp | 88.32x | 154.494 GB |
Coverage based on genome size 1.00 Gbp.
Last upload on 3 March 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Ciconia_maguari/bCicMag1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 15 July 2020
bCicMag1.pri.cur.20200715.fasta.gz (358 MB)
Version assembly_curated from 15 July 2020
bCicMag1.pri.cur.20200715.fasta.gz (358 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 1 | 54.29 Mbp | 0 | 220.37 Mbp |
20 | 3 | 43.90 Mbp | 0 | 220.37 Mbp |
30 | 6 | 32.95 Mbp | 1 | 169.11 Mbp |
40 | 9 | 29.67 Mbp | 2 | 128.64 Mbp |
50 | 13 | 24.94 Mbp | 2 | 128.64 Mbp |
60 | 17 | 23.76 Mbp | 3 | 87.15 Mbp |
70 | 22 | 16.21 Mbp | 5 | 72.61 Mbp |
80 | 29 | 13.21 Mbp | 6 | 67.88 Mbp |
90 | 37 | 11.21 Mbp | 8 | 46.75 Mbp |
100 | 50 | 6.26 Mbp | 10 | 25.27 Mbp |
1.217x | 384 | 1.22 Gbp | 152 | 1.24 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 15 July 2020
bCicMag1.alt.cur.20200715.fasta.gz (287 MB)
Version assembly_curated from 15 July 2020
bCicMag1.alt.cur.20200715.fasta.gz (287 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 77 | 0.94 Mbp | 77 | 0.94 Mbp |
20 | 205 | 0.66 Mbp | 205 | 0.66 Mbp |
30 | 376 | 0.52 Mbp | 376 | 0.52 Mbp |
40 | 592 | 0.41 Mbp | 592 | 0.41 Mbp |
50 | 862 | 0.33 Mbp | 862 | 0.33 Mbp |
60 | 1195 | 0.27 Mbp | 1195 | 0.27 Mbp |
70 | 1613 | 0.21 Mbp | 1613 | 0.21 Mbp |
80 | 2167 | 0.15 Mbp | 2167 | 0.15 Mbp |
90 | 3012 | 87.56 Kbp | 3012 | 87.56 Kbp |
100 | - | - | - | - |
0.968x | 4283 | 0.97 Gbp | 4278 | 0.97 Gbp |
NG based on genome size 1.00 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 26 February 2020
bCicMag1.MT.20200226.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 26 February 2020
bCicMag1.MT.20200226.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.