Cottoperca gobio
channel bull blenny
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid56716 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_900634415.1 | GCA_900634435.1 |
| ENA | GCA_900634415.1 | GCA_900634435.1 |
| UCSC Genome Browser | GCA_900634415.1 | GCA_900634435.1 |
Copyright Chris Cheng, used with permission
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 97.65 Gbp | 139.49x | 65.656 GB |
| Arima | 88.25 Gbp | 126.07x | 43.692 GB |
| Bionano | 2649.65 Gbp | 3785.21x | 3.399 GB |
| PacBio SubReads | 48.61 Gbp | 69.44x | 86.794 GB |
Coverage based on genome size 0.70 Gbp.
Last upload on 12 April 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob3/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob3/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob3/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 3 Primary Assembly
Version assembly_curated from 26 October 2018
fCotGob3.pri.cur.20181026.fasta.gz (160 MB)
Version assembly_curated from 26 October 2018
fCotGob3.pri.cur.20181026.fasta.gz (160 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 18.77 Mbp | 2 | 30.03 Mbp |
| 20 | 8 | 12.18 Mbp | 4 | 27.74 Mbp |
| 30 | 14 | 8.97 Mbp | 7 | 27.06 Mbp |
| 40 | 24 | 6.45 Mbp | 9 | 25.70 Mbp |
| 50 | 36 | 5.03 Mbp | 12 | 24.10 Mbp |
| 60 | 55 | 2.77 Mbp | 15 | 22.90 Mbp |
| 70 | 90 | 1.38 Mbp | 18 | 22.19 Mbp |
| 80 | 188 | 0.36 Mbp | 22 | 14.93 Mbp |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.867x | 767 | 0.61 Gbp | 322 | 0.61 Gbp |
NG based on genome size 0.70 Gbp.
Individual 3 Alternate Assembly
Version assembly_curated from 26 October 2018
fCotGob3.alt.cur.20181026.fasta.gz (194 MB)
Version assembly_curated from 26 October 2018
fCotGob3.alt.cur.20181026.fasta.gz (194 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 102 | 0.48 Mbp | 102 | 0.48 Mbp |
| 20 | 294 | 0.30 Mbp | 294 | 0.30 Mbp |
| 30 | 568 | 0.21 Mbp | 568 | 0.22 Mbp |
| 40 | 959 | 0.15 Mbp | 958 | 0.15 Mbp |
| 50 | 1541 | 0.10 Mbp | 1539 | 0.10 Mbp |
| 60 | 2413 | 65.39 Kbp | 2411 | 65.39 Kbp |
| 70 | 3709 | 45.53 Kbp | 3706 | 45.53 Kbp |
| 80 | 5563 | 31.56 Kbp | 5560 | 31.56 Kbp |
| 90 | 8335 | 19.60 Kbp | 8332 | 19.60 Kbp |
| 100 | - | - | - | - |
| 0.959x | 11565 | 0.67 Gbp | 11555 | 0.67 Gbp |
NG based on genome size 0.70 Gbp.
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.