Cottoperca gobio

channel bull blenny


Information

NCBI Taxonomy Browser
Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Copyright Chris Cheng, used with permission

Raw Data

Datatype Approximate Coverage Download Size
10x139.49x65.656 GB
Arima126.07x43.692 GB
Bionano3785.21x3.399 GB
PacBio SubReads69.44x86.794 GB
Coverage based on genome size 0.70 Gbp.
Last upload on 12 April 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob3/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob2/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob3/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cottoperca_gobio/fCotGob3/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Primary assembly in GenBank or ENA
Alternate assembly in GenBank or ENA
Individual 3 Primary Assembly
Version assembly_curated from 26 October 2018
fCotGob3.pri.cur.20181026.fasta.gz (160 MB)

Contigs Scaffolds
NG LG Len LG Len
10 3 18.77 Mbp 2 30.03 Mbp
20 8 12.18 Mbp 4 27.74 Mbp
30 14 8.97 Mbp 7 27.06 Mbp
40 24 6.45 Mbp 9 25.70 Mbp
50 36 5.03 Mbp 12 24.10 Mbp
60 55 2.77 Mbp 15 22.90 Mbp
70 90 1.38 Mbp 18 22.19 Mbp
80 188 0.36 Mbp 22 14.93 Mbp
90 - - - -
100 - - - -
0.867x 767 0.61 Gbp 322 0.61 Gbp
Individual 3 Alternate Assembly
Version assembly_curated from 26 October 2018
fCotGob3.alt.cur.20181026.fasta.gz (194 MB)

Contigs Scaffolds
NG LG Len LG Len
10 102 0.48 Mbp 102 0.48 Mbp
20 294 0.30 Mbp 294 0.30 Mbp
30 568 0.21 Mbp 568 0.22 Mbp
40 959 0.15 Mbp 958 0.15 Mbp
50 1541 0.10 Mbp 1539 0.10 Mbp
60 2413 65.39 Kbp 2411 65.39 Kbp
70 3709 45.53 Kbp 3706 45.53 Kbp
80 5563 31.56 Kbp 5560 31.56 Kbp
90 8335 19.59 Kbp 8332 19.59 Kbp
100 - - - -
0.959x 11565 0.67 Gbp 11555 0.67 Gbp
NG based on genome size 0.70 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.