Cygnus olor

mute swan


Information

NCBI Taxonomy Browser
CC BY-SA 3.0 Charles J Sharp (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10x49.94x37.600 GB
Arima70.32x62.015 GB
Bionano348.05x0.808 GB
PacBio SubReads60.23x155.236 GB
Coverage based on genome size 1.48 Gbp.
Last upload on 27 July 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 26 September 2019
bCygOlo1.pri.cur.20190926.fasta.gz (329 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 19.51 Mbp 0 209.74 Mbp
20 15 14.35 Mbp 1 161.16 Mbp
30 27 10.89 Mbp 2 121.16 Mbp
40 44 7.03 Mbp 4 77.81 Mbp
50 69 4.97 Mbp 6 40.60 Mbp
60 108 2.96 Mbp 11 22.22 Mbp
70 194 0.96 Mbp 19 12.20 Mbp
80 - - - -
90 - - - -
100 - - - -
0.760x 626 1.12 Gbp 180 1.13 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 26 September 2019
bCygOlo1.alt.cur.20190926.fasta.gz (245 MB)

Contigs Scaffolds
NG LG Len LG Len
10 149 0.74 Mbp 149 0.74 Mbp
20 409 0.46 Mbp 409 0.46 Mbp
30 812 0.29 Mbp 812 0.29 Mbp
40 1469 0.17 Mbp 1468 0.17 Mbp
50 3125 48.90 Kbp 3124 48.92 Kbp
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.550x 5616 0.81 Gbp 5613 0.81 Gbp
NG based on genome size 1.48 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 September 2019
bCygOlo1.MT.20190928.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.