Cygnus olor

mute swan


Information

Resource
NCBI Taxonomy Browser NCBI:txid8869

Resource Primary Assembly Alternate Assembly
GenBank GCA_009769625.2 GCA_009769485.2
ENA GCA_009769625.2 GCA_009769485.2
UCSC Genome Browser GCA_009769625.2 GCA_009769485.2

CC BY-SA 3.0 Charles J Sharp (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x73.91 Gbp49.94x37.600 GB
Arima104.07 Gbp70.32x62.015 GB
Bionano515.11 Gbp348.05x0.808 GB
PacBio SubReads88.99 Gbp60.13x155.236 GB
Coverage based on genome size 1.48 Gbp.
Last upload on 27 July 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 30 November 2020
bCygOlo1.pri.cur.20201130.fasta.gz (329 MB)

Contigs Scaffolds
NG LG Len LG Len
10 6 19.51 Mbp 0 209.52 Mbp
20 15 14.59 Mbp 1 160.82 Mbp
30 26 11.46 Mbp 2 121.08 Mbp
40 41 7.74 Mbp 4 77.82 Mbp
50 65 4.99 Mbp 6 40.61 Mbp
60 104 2.98 Mbp 11 22.22 Mbp
70 190 0.93 Mbp 19 12.20 Mbp
80 - - - -
90 - - - -
100 - - - -
0.760x 621 1.12 Gbp 170 1.13 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 30 November 2020
bCygOlo1.alt.cur.20201130.fasta.gz (239 MB)

Contigs Scaffolds
NG LG Len LG Len
10 149 0.74 Mbp 149 0.74 Mbp
20 408 0.46 Mbp 408 0.46 Mbp
30 811 0.29 Mbp 811 0.29 Mbp
40 1468 0.17 Mbp 1468 0.17 Mbp
50 3123 48.93 Kbp 3122 48.94 Kbp
60 - - - -
70 - - - -
80 - - - -
90 - - - -
100 - - - -
0.550x 5640 0.81 Gbp 5626 0.81 Gbp
NG based on genome size 1.48 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 September 2019
bCygOlo1.MT.20190928.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.