Cygnus olor
mute swan
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid8869 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_009769625.2 | GCA_009769485.2 |
| ENA | GCA_009769625.2 | GCA_009769485.2 |
| UCSC Genome Browser | GCA_009769625.2 | GCA_009769485.2 |
CC BY-SA 3.0 Charles J Sharp (wikimedia)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 73.91 Gbp | 49.94x | 37.600 GB |
| Arima | 104.07 Gbp | 70.32x | 62.015 GB |
| Bionano | 515.11 Gbp | 348.05x | 0.808 GB |
| PacBio SubReads | 88.99 Gbp | 60.13x | 155.236 GB |
Coverage based on genome size 1.48 Gbp.
Last upload on 27 July 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 30 November 2020
bCygOlo1.pri.cur.20201130.fasta.gz (329 MB)
Version assembly_curated from 30 November 2020
bCygOlo1.pri.cur.20201130.fasta.gz (329 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 6 | 19.51 Mbp | 0 | 209.52 Mbp |
| 20 | 15 | 14.59 Mbp | 1 | 160.82 Mbp |
| 30 | 26 | 11.46 Mbp | 2 | 121.08 Mbp |
| 40 | 41 | 7.74 Mbp | 4 | 77.82 Mbp |
| 50 | 65 | 4.99 Mbp | 6 | 40.61 Mbp |
| 60 | 104 | 2.98 Mbp | 11 | 22.22 Mbp |
| 70 | 190 | 0.93 Mbp | 19 | 12.20 Mbp |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.760x | 621 | 1.12 Gbp | 170 | 1.13 Gbp |
NG based on genome size 1.48 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 30 November 2020
bCygOlo1.alt.cur.20201130.fasta.gz (239 MB)
Version assembly_curated from 30 November 2020
bCygOlo1.alt.cur.20201130.fasta.gz (239 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 149 | 0.74 Mbp | 149 | 0.74 Mbp |
| 20 | 408 | 0.46 Mbp | 408 | 0.46 Mbp |
| 30 | 811 | 0.29 Mbp | 811 | 0.29 Mbp |
| 40 | 1468 | 0.17 Mbp | 1468 | 0.17 Mbp |
| 50 | 3123 | 48.93 Kbp | 3122 | 48.95 Kbp |
| 60 | - | - | - | - |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.550x | 5640 | 0.81 Gbp | 5626 | 0.81 Gbp |
NG based on genome size 1.48 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 September 2019
bCygOlo1.MT.20190928.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 28 September 2019
bCygOlo1.MT.20190928.fasta.gz (5 KB)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.