Cygnus olor
mute swan
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid8869 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_009769625.2 | GCA_009769485.2 |
ENA | GCA_009769625.2 | GCA_009769485.2 |
UCSC Genome Browser | GCA_009769625.2 | GCA_009769485.2 |
CC BY-SA 3.0 Charles J Sharp (wikimedia)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 73.91 Gbp | 49.94x | 37.600 GB |
Arima | 104.07 Gbp | 70.32x | 62.015 GB |
Bionano | 515.11 Gbp | 348.05x | 0.808 GB |
PacBio SubReads | 88.99 Gbp | 60.13x | 155.236 GB |
Coverage based on genome size 1.48 Gbp.
Last upload on 27 July 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Cygnus_olor/bCygOlo1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 30 November 2020
bCygOlo1.pri.cur.20201130.fasta.gz (329 MB)
Version assembly_curated from 30 November 2020
bCygOlo1.pri.cur.20201130.fasta.gz (329 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 6 | 19.51 Mbp | 0 | 209.52 Mbp |
20 | 15 | 14.59 Mbp | 1 | 160.82 Mbp |
30 | 26 | 11.46 Mbp | 2 | 121.08 Mbp |
40 | 41 | 7.74 Mbp | 4 | 77.82 Mbp |
50 | 65 | 4.99 Mbp | 6 | 40.61 Mbp |
60 | 104 | 2.98 Mbp | 11 | 22.22 Mbp |
70 | 190 | 0.93 Mbp | 19 | 12.20 Mbp |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.760x | 621 | 1.12 Gbp | 170 | 1.13 Gbp |
NG based on genome size 1.48 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 30 November 2020
bCygOlo1.alt.cur.20201130.fasta.gz (239 MB)
Version assembly_curated from 30 November 2020
bCygOlo1.alt.cur.20201130.fasta.gz (239 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 149 | 0.74 Mbp | 149 | 0.74 Mbp |
20 | 408 | 0.46 Mbp | 408 | 0.46 Mbp |
30 | 811 | 0.29 Mbp | 811 | 0.29 Mbp |
40 | 1468 | 0.17 Mbp | 1468 | 0.17 Mbp |
50 | 3123 | 48.93 Kbp | 3122 | 48.95 Kbp |
60 | - | - | - | - |
70 | - | - | - | - |
80 | - | - | - | - |
90 | - | - | - | - |
100 | - | - | - | - |
0.550x | 5640 | 0.81 Gbp | 5626 | 0.81 Gbp |
NG based on genome size 1.48 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 September 2019
bCygOlo1.MT.20190928.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 28 September 2019
bCygOlo1.MT.20190928.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.