Denticeps clupeoides

denticle herring


Information

Resource
NCBI Taxonomy Browser NCBI:txid299321

Resource Primary Assembly Alternate Assembly
GenBank GCA_900700375.2 GCA_900700345.2
ENA GCA_900700375.2 GCA_900700345.2
UCSC Genome Browser GCA_900700375.2 GCA_900700345.2

Copyright Ralf Britz/NHM, used with permission

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x116.93 Gbp206.08x73.032 GB
Arima54.73 Gbp96.45x27.804 GB
Bionano720.97 Gbp1270.66x1.006 GB
PacBio SubReads36.63 Gbp64.56x64.234 GB
Coverage based on genome size 0.57 Gbp.
Last upload on 2 September 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 5 March 2019
fDenClu1.pri.cur.20190305.fasta.gz (162 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 7.60 Mbp 1 39.02 Mbp
20 14 6.22 Mbp 2 36.91 Mbp
30 24 4.99 Mbp 4 34.21 Mbp
40 36 3.91 Mbp 6 25.34 Mbp
50 52 3.06 Mbp 8 22.79 Mbp
60 74 2.25 Mbp 11 22.54 Mbp
70 105 1.57 Mbp 14 21.43 Mbp
80 150 0.94 Mbp 16 20.35 Mbp
90 261 0.25 Mbp 19 19.30 Mbp
100 923 193 bp 459 8.88 Kbp
1.000x 924 0.56 Gbp 460 0.57 Gbp
NG based on genome size 0.57 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2019
fDenClu1.alt.cur.20190305.fasta.gz (134 MB)

Contigs Scaffolds
NG LG Len LG Len
10 30 1.16 Mbp 30 1.16 Mbp
20 79 0.80 Mbp 79 0.80 Mbp
30 146 0.61 Mbp 146 0.61 Mbp
40 229 0.50 Mbp 229 0.50 Mbp
50 333 0.38 Mbp 333 0.38 Mbp
60 465 0.31 Mbp 465 0.31 Mbp
70 630 0.24 Mbp 630 0.24 Mbp
80 848 0.18 Mbp 848 0.18 Mbp
90 1159 0.12 Mbp 1158 0.12 Mbp
100 1975 164 bp 1971 191 bp
1.000x 1976 457.70 Mbp 1972 457.70 Mbp
NG based on genome size 0.57 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fDenClu1.MT.20191002.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.