Denticeps clupeoides
denticle herring
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid299321 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_900700375.2 | GCA_900700345.2 |
ENA | GCA_900700375.2 | GCA_900700345.2 |
UCSC Genome Browser | GCA_900700375.2 | GCA_900700345.2 |
Copyright Ralf Britz/NHM, used with permission
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 116.93 Gbp | 206.08x | 73.032 GB |
Arima | 54.73 Gbp | 96.45x | 27.804 GB |
Bionano | 720.97 Gbp | 1270.66x | 1.006 GB |
PacBio SubReads | 36.63 Gbp | 64.56x | 64.234 GB |
Coverage based on genome size 0.57 Gbp.
Last upload on 2 September 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Denticeps_clupeoides/fDenClu1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 5 March 2019
fDenClu1.pri.cur.20190305.fasta.gz (162 MB)
Version assembly_curated from 5 March 2019
fDenClu1.pri.cur.20190305.fasta.gz (162 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 5 | 7.60 Mbp | 1 | 39.02 Mbp |
20 | 14 | 6.22 Mbp | 2 | 36.91 Mbp |
30 | 24 | 4.99 Mbp | 4 | 34.21 Mbp |
40 | 36 | 3.91 Mbp | 6 | 25.34 Mbp |
50 | 52 | 3.06 Mbp | 8 | 22.79 Mbp |
60 | 74 | 2.25 Mbp | 11 | 22.54 Mbp |
70 | 105 | 1.57 Mbp | 14 | 21.43 Mbp |
80 | 150 | 0.94 Mbp | 16 | 20.35 Mbp |
90 | 261 | 0.25 Mbp | 19 | 19.30 Mbp |
100 | 923 | 193 bp | 459 | 8.88 Kbp |
1.000x | 924 | 0.56 Gbp | 460 | 0.57 Gbp |
NG based on genome size 0.57 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2019
fDenClu1.alt.cur.20190305.fasta.gz (134 MB)
Version assembly_curated from 5 March 2019
fDenClu1.alt.cur.20190305.fasta.gz (134 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 30 | 1.16 Mbp | 30 | 1.16 Mbp |
20 | 79 | 0.80 Mbp | 79 | 0.80 Mbp |
30 | 146 | 0.61 Mbp | 146 | 0.61 Mbp |
40 | 229 | 0.50 Mbp | 229 | 0.50 Mbp |
50 | 333 | 0.38 Mbp | 333 | 0.38 Mbp |
60 | 465 | 0.31 Mbp | 465 | 0.31 Mbp |
70 | 630 | 0.24 Mbp | 630 | 0.24 Mbp |
80 | 848 | 0.18 Mbp | 848 | 0.18 Mbp |
90 | 1159 | 0.12 Mbp | 1158 | 0.12 Mbp |
100 | 1975 | 164 bp | 1971 | 191 bp |
1.000x | 1976 | 457.70 Mbp | 1972 | 457.70 Mbp |
NG based on genome size 0.57 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fDenClu1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fDenClu1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.