Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | N/A | 116.733 GB |
| Arima | N/A | 117.434 GB |
| Bionano | N/A | 0.991 GB |
| PacBio SubReads | N/A | 366.126 GB |
No genome size estimate available.
Last upload on 28 September 2020.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Dromiciops_gliroides/mDroGli1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Dromiciops_gliroides/mDroGli1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Dromiciops_gliroides/mDroGli1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Dromiciops_gliroides/mDroGli1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Dromiciops_gliroides/mDroGli1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Dromiciops_gliroides/mDroGli1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Dromiciops_gliroides/mDroGli1/genomic_data/pacbio/ . --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.6 from 1 October 2020
mDroGli1.pri.asm.20201001.fasta.gz (955 MB)
Version assembly_vgp_standard_1.6 from 1 October 2020
mDroGli1.pri.asm.20201001.fasta.gz (955 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 3 | 93.56 Mbp | 0 | 0.76 Gbp |
| 20 | 6 | 66.17 Mbp | 0 | 0.76 Gbp |
| 30 | 12 | 54.30 Mbp | 1 | 0.70 Gbp |
| 40 | 19 | 44.74 Mbp | 1 | 0.70 Gbp |
| 50 | 26 | 38.23 Mbp | 2 | 473.44 Mbp |
| 60 | 36 | 30.66 Mbp | 3 | 460.90 Mbp |
| 70 | 48 | 24.99 Mbp | 3 | 460.90 Mbp |
| 80 | 63 | 17.30 Mbp | 4 | 303.24 Mbp |
| 90 | 87 | 10.54 Mbp | 5 | 280.71 Mbp |
| 100 | 296 | 162 bp | 53 | 2.78 Kbp |
| 1.000x | 297 | 3.30 Gbp | 54 | 3.31 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.6 from 1 October 2020
mDroGli1.alt.asm.20201001.fasta.gz (824 MB)
Version assembly_vgp_standard_1.6 from 1 October 2020
mDroGli1.alt.asm.20201001.fasta.gz (824 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 168 | 1.29 Mbp | 168 | 1.29 Mbp |
| 20 | 424 | 0.97 Mbp | 424 | 0.97 Mbp |
| 30 | 748 | 0.78 Mbp | 748 | 0.78 Mbp |
| 40 | 1155 | 0.62 Mbp | 1155 | 0.62 Mbp |
| 50 | 1663 | 0.49 Mbp | 1663 | 0.49 Mbp |
| 60 | 2311 | 0.38 Mbp | 2311 | 0.38 Mbp |
| 70 | 3170 | 0.28 Mbp | 3170 | 0.28 Mbp |
| 80 | 4388 | 0.19 Mbp | 4387 | 0.19 Mbp |
| 90 | 6236 | 0.12 Mbp | 6232 | 0.12 Mbp |
| 100 | 9908 | 1 bp | 9883 | 2.10 Kbp |
| 1.000x | 9909 | 2.82 Gbp | 9884 | 2.82 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.