Echeneis naucrates

live sharksucker


Information

CC BY 2.0 Richard ling (wikimedia)

Raw Data

Datatype Approximate Coverage Download Size
10xN/A79.751 GB
BionanoN/A0.900 GB
Dovetail GenomicsN/A83.970 GB
PacBio ScrapsN/A139.778 GB
PacBio SubReadsN/A79.001 GB
No genome size estimate available.
Last upload on 5 February 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.pri.cur.20190401.fasta.gz (147 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 18.72 Mbp 1 26.82 Mbp
20 5 17.47 Mbp 4 25.44 Mbp
30 8 16.72 Mbp 6 24.88 Mbp
40 12 14.27 Mbp 8 24.57 Mbp
50 16 12.37 Mbp 10 23.29 Mbp
60 21 9.90 Mbp 13 22.31 Mbp
70 27 6.88 Mbp 15 20.80 Mbp
80 36 4.25 Mbp 18 20.38 Mbp
90 58 1.72 Mbp 20 19.09 Mbp
100 176 72 bp 36 19.22 Kbp
1.000x 177 0.54 Gbp 37 0.54 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.alt.cur.20190401.fasta.gz (155 MB)

Contigs Scaffolds
NG LG Len LG Len
10 14 2.79 Mbp 11 3.07 Mbp
20 36 1.97 Mbp 32 2.05 Mbp
30 66 1.58 Mbp 61 1.65 Mbp
40 106 1.17 Mbp 99 1.24 Mbp
50 157 0.89 Mbp 148 0.92 Mbp
60 229 0.62 Mbp 218 0.64 Mbp
70 333 0.42 Mbp 320 0.43 Mbp
80 488 0.27 Mbp 475 0.27 Mbp
90 750 0.16 Mbp 736 0.16 Mbp
100 1423 313 bp 1404 313 bp
1.000x 1424 0.53 Gbp 1405 0.53 Gbp
No genome size estimate available.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.