Echeneis naucrates
live sharksucker
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid173247 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_900963305.2 | GCA_900963505.1 |
ENA | GCA_900963305.2 | GCA_900963505.1 |
UCSC Genome Browser | GCA_900963305.2 | GCA_900963505.1 |
CC BY 2.0 Richard ling (wikimedia)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 126.47 Gbp | 232.39x | 79.751 GB |
Bionano | 715.63 Gbp | 1314.98x | 0.900 GB |
Dovetail Genomics | 137.61 Gbp | 252.87x | 83.970 GB |
PacBio SubReads | 45.22 Gbp | 83.09x | 79.001 GB |
Coverage based on genome size 0.54 Gbp.
Last upload on 5 February 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.pri.cur.20190401.fasta.gz (147 MB)
Version assembly_curated from 1 April 2019
fEcheNa1.pri.cur.20190401.fasta.gz (147 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 2 | 18.72 Mbp | 1 | 26.82 Mbp |
20 | 5 | 17.47 Mbp | 4 | 25.44 Mbp |
30 | 8 | 16.72 Mbp | 6 | 24.88 Mbp |
40 | 12 | 14.27 Mbp | 8 | 24.57 Mbp |
50 | 16 | 12.37 Mbp | 10 | 23.29 Mbp |
60 | 21 | 9.90 Mbp | 13 | 22.31 Mbp |
70 | 27 | 6.88 Mbp | 15 | 20.80 Mbp |
80 | 36 | 4.25 Mbp | 18 | 20.38 Mbp |
90 | 58 | 1.72 Mbp | 20 | 19.09 Mbp |
100 | 176 | 72 bp | 36 | 19.22 Kbp |
1.000x | 177 | 0.54 Gbp | 37 | 0.54 Gbp |
NG based on genome size 0.54 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.alt.cur.20190401.fasta.gz (155 MB)
Version assembly_curated from 1 April 2019
fEcheNa1.alt.cur.20190401.fasta.gz (155 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 14 | 2.79 Mbp | 11 | 3.07 Mbp |
20 | 36 | 1.97 Mbp | 32 | 2.05 Mbp |
30 | 66 | 1.58 Mbp | 61 | 1.65 Mbp |
40 | 106 | 1.17 Mbp | 99 | 1.24 Mbp |
50 | 157 | 0.89 Mbp | 148 | 0.92 Mbp |
60 | 229 | 0.62 Mbp | 218 | 0.64 Mbp |
70 | 333 | 0.42 Mbp | 320 | 0.43 Mbp |
80 | 488 | 0.27 Mbp | 475 | 0.27 Mbp |
90 | 750 | 0.16 Mbp | 736 | 0.16 Mbp |
100 | 1423 | 313 bp | 1404 | 313 bp |
1.000x | 1424 | 0.53 Gbp | 1405 | 0.53 Gbp |
NG based on genome size 0.54 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fEcheNa1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fEcheNa1.MT.20191002.fasta.gz (5 KB)
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