Echeneis naucrates

live sharksucker


Information

Resource
NCBI Taxonomy Browser NCBI:txid173247

Resource Primary Assembly Alternate Assembly
GenBank GCA_900963305.2 GCA_900963505.1
ENA GCA_900963305.2 GCA_900963505.1
UCSC Genome Browser GCA_900963305.2 GCA_900963505.1

CC BY 2.0 Richard ling (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x126.47 Gbp232.39x79.751 GB
Bionano715.63 Gbp1314.98x0.900 GB
Dovetail Genomics137.61 Gbp252.87x83.970 GB
PacBio SubReads45.22 Gbp83.09x79.001 GB
Coverage based on genome size 0.54 Gbp.
Last upload on 5 February 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Echeneis_naucrates/fEcheNa1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.pri.cur.20190401.fasta.gz (147 MB)

Contigs Scaffolds
NG LG Len LG Len
10 2 18.72 Mbp 1 26.82 Mbp
20 5 17.47 Mbp 4 25.44 Mbp
30 8 16.72 Mbp 6 24.88 Mbp
40 12 14.27 Mbp 8 24.57 Mbp
50 16 12.37 Mbp 10 23.29 Mbp
60 21 9.90 Mbp 13 22.31 Mbp
70 27 6.88 Mbp 15 20.80 Mbp
80 36 4.25 Mbp 18 20.38 Mbp
90 58 1.72 Mbp 20 19.09 Mbp
100 176 72 bp 36 19.22 Kbp
1.000x 177 0.54 Gbp 37 0.54 Gbp
NG based on genome size 0.54 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 1 April 2019
fEcheNa1.alt.cur.20190401.fasta.gz (155 MB)

Contigs Scaffolds
NG LG Len LG Len
10 14 2.79 Mbp 11 3.07 Mbp
20 36 1.97 Mbp 32 2.05 Mbp
30 66 1.58 Mbp 61 1.65 Mbp
40 106 1.17 Mbp 99 1.24 Mbp
50 157 0.89 Mbp 148 0.92 Mbp
60 229 0.62 Mbp 218 0.64 Mbp
70 333 0.42 Mbp 320 0.43 Mbp
80 488 0.27 Mbp 475 0.27 Mbp
90 750 0.16 Mbp 736 0.16 Mbp
100 1423 313 bp 1404 313 bp
1.000x 1424 0.53 Gbp 1405 0.53 Gbp
NG based on genome size 0.54 Gbp.

Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fEcheNa1.MT.20191002.fasta.gz (5 KB)

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