Electrophorus electricus
electric eel
Information
| Resource | |
|---|---|
| NCBI Taxonomy Browser | NCBI:txid8005 |
| Resource | Primary Assembly | Alternate Assembly |
|---|---|---|
| GenBank | GCA_013358815.1 | GCA_013347915.1 |
| ENA | GCA_013358815.1 | GCA_013347915.1 |
| UCSC Genome Browser | GCA_013358815.1 | GCA_013347915.1 |
CC BY 2.0 Ryan Ready (flickr)
Raw Data
| Datatype | Approximate Size | Download Size | |
|---|---|---|---|
| Bases | Coverage | ||
| 10x | 71.10 Gbp | 73.35x | 32.991 GB |
| Bionano | 192.06 Gbp | 198.15x | 0.205 GB |
| PacBio SubReads | 51.34 Gbp | 52.97x | 87.236 GB |
Coverage based on genome size 0.97 Gbp.
Last upload on 31 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Electrophorus_electricus/fEleEle1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Electrophorus_electricus/fEleEle1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Electrophorus_electricus/fEleEle1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Electrophorus_electricus/fEleEle1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Electrophorus_electricus/fEleEle1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 17 March 2020
fEleEle1.pri.cur.20200317.fasta.gz (162 MB)
Version assembly_curated from 17 March 2020
fEleEle1.pri.cur.20200317.fasta.gz (162 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 5 | 13.16 Mbp | 2 | 32.54 Mbp |
| 20 | 13 | 10.30 Mbp | 5 | 30.14 Mbp |
| 30 | 25 | 6.96 Mbp | 9 | 25.66 Mbp |
| 40 | 42 | 4.50 Mbp | 13 | 22.70 Mbp |
| 50 | 76 | 1.97 Mbp | 18 | 16.41 Mbp |
| 60 | - | - | 25 | 10.95 Mbp |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.597x | 316 | 0.58 Gbp | 89 | 0.59 Gbp |
NG based on genome size 0.97 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 17 March 2020
fEleEle1.alt.cur.20200317.fasta.gz (123 MB)
Version assembly_curated from 17 March 2020
fEleEle1.alt.cur.20200317.fasta.gz (123 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 193 | 0.36 Mbp | 193 | 0.36 Mbp |
| 20 | 531 | 0.24 Mbp | 531 | 0.24 Mbp |
| 30 | 1032 | 0.16 Mbp | 1032 | 0.16 Mbp |
| 40 | 1865 | 83.12 Kbp | 1865 | 83.12 Kbp |
| 50 | - | - | - | - |
| 60 | - | - | - | - |
| 70 | - | - | - | - |
| 80 | - | - | - | - |
| 90 | - | - | - | - |
| 100 | - | - | - | - |
| 0.442x | 2630 | 428.14 Mbp | 2630 | 428.14 Mbp |
NG based on genome size 0.97 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fEleEle1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fEleEle1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.