Erithacus rubecula

European robin


Information

Resource
NCBI Taxonomy Browser NCBI:txid37610

Resource Primary Assembly Alternate Assembly
GenBank GCA_903797595.2 GCA_903797565.2
ENA GCA_903797595.2 GCA_903797565.2
UCSC Genome Browser GCA_903797595.2 GCA_903797565.2

CC BY-SA 2.0, Juan Emilio (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x125.85 Gbp115.80x78.131 GB
Dovetail Genomics136.58 Gbp125.68x85.060 GB
PacBio SubReads74.45 Gbp68.51x130.206 GB
Coverage based on genome size 1.09 Gbp.
Last upload on 18 December 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Erithacus_rubecula/bEriRub2/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erithacus_rubecula/bEriRub2/genomic_data/dovetail/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erithacus_rubecula/bEriRub2/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 2 Primary Assembly
Version assembly_curated from 3 June 2020
bEriRub2.pri.cur.20200603.fasta.gz (313 MB)

Contigs Scaffolds
NG LG Len LG Len
10 5 16.37 Mbp 0 112.10 Mbp
20 12 12.24 Mbp 1 109.05 Mbp
30 22 10.07 Mbp 3 68.60 Mbp
40 34 7.47 Mbp 4 68.52 Mbp
50 51 5.59 Mbp 6 46.56 Mbp
60 75 3.52 Mbp 9 31.99 Mbp
70 113 2.18 Mbp 13 20.40 Mbp
80 189 0.92 Mbp 20 13.42 Mbp
90 401 0.28 Mbp 35 3.15 Mbp
100 2108 1.64 Kbp 1119 9.77 Kbp
1.000x 2109 1.09 Gbp 1120 1.09 Gbp
NG based on genome size 1.09 Gbp.
Individual 2 Alternate Assembly
Version assembly_curated from 3 June 2020
bEriRub2.alt.cur.20200603.fasta.gz (264 MB)

Contigs Scaffolds
NG LG Len LG Len
10 32 2.06 Mbp 32 2.06 Mbp
20 88 1.41 Mbp 88 1.41 Mbp
30 165 1.03 Mbp 165 1.03 Mbp
40 269 0.77 Mbp 269 0.77 Mbp
50 404 0.60 Mbp 404 0.60 Mbp
60 585 0.43 Mbp 584 0.43 Mbp
70 842 0.30 Mbp 840 0.30 Mbp
80 1232 0.19 Mbp 1226 0.19 Mbp
90 1887 0.10 Mbp 1878 0.10 Mbp
100 3685 222 bp 3667 222 bp
1.000x 3686 0.91 Gbp 3668 0.91 Gbp
NG based on genome size 1.09 Gbp.

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.