Erpetoichthys calabaricus

reedfish


Information

Resource
NCBI Taxonomy Browser NCBI:txid27687

Resource Primary Assembly Alternate Assembly
GenBank GCA_900700845.2
ENA GCA_900700845.2
UCSC Genome Browser GCA_900700845.2

CC BY-SA 3.0 Michał Zalewski (wikimedia)

Raw Data

Datatype Approximate Size Download Size
Bases Coverage
10x246.27 Gbp64.62x163.142 GB
Arima268.07 Gbp70.34x152.416 GB
Bionano1179.25 Gbp309.43x1.938 GB
PacBio SubReads196.47 Gbp51.55x353.718 GB
Coverage based on genome size 3.81 Gbp.
Last upload on 10 September 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/pacbio/ . --exclude "*ccs*bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 5 March 2019
fErpCal1.pri.cur.20190305.fasta.gz (1 GB)

Contigs Scaffolds
NG LG Len LG Len
10 76 3.60 Mbp 1 332.46 Mbp
20 205 2.33 Mbp 2 309.31 Mbp
30 378 1.86 Mbp 3 293.87 Mbp
40 592 1.47 Mbp 5 209.93 Mbp
50 867 1.14 Mbp 6 199.23 Mbp
60 1223 0.88 Mbp 8 195.12 Mbp
70 1697 0.64 Mbp 11 163.43 Mbp
80 2359 0.44 Mbp 13 111.84 Mbp
90 3441 0.24 Mbp 17 88.37 Mbp
100 7497 107 bp 1883 3.04 Kbp
1.000x 7498 3.57 Gbp 1884 3.81 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2019
fErpCal1.alt.cur.20190305.fasta.gz (765 MB)

Contigs Scaffolds
NG LG Len LG Len
10 794 0.26 Mbp 794 0.26 Mbp
20 1981 0.19 Mbp 1981 0.19 Mbp
30 3517 0.15 Mbp 3516 0.15 Mbp
40 5430 0.12 Mbp 5429 0.12 Mbp
50 7806 98.42 Kbp 7805 98.43 Kbp
60 10774 78.54 Kbp 10772 78.55 Kbp
70 14498 62.18 Kbp 14496 62.19 Kbp
80 19295 47.38 Kbp 19293 47.38 Kbp
90 25876 32.51 Kbp 25874 32.52 Kbp
100 38597 142 bp 38592 142 bp
1.000x 38598 2.61 Gbp 38593 2.61 Gbp
NG based on genome size 3.81 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fErpCal1.MT.20191002.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.