Erpetoichthys calabaricus
reedfish
Information
Resource | |
---|---|
NCBI Taxonomy Browser | NCBI:txid27687 |
Resource | Primary Assembly | Alternate Assembly |
---|---|---|
GenBank | GCA_900747795.4 | GCA_900700845.3 |
ENA | GCA_900747795.4 | GCA_900700845.3 |
UCSC Genome Browser | GCA_900747795.4 | GCA_900700845.3 |
CC BY-SA 3.0 MichaĆ Zalewski (wikimedia)
Raw Data
Datatype | Approximate Size | Download Size | |
---|---|---|---|
Bases | Coverage | ||
10x | 246.27 Gbp | 64.62x | 163.142 GB |
Arima | 268.07 Gbp | 70.34x | 152.416 GB |
Bionano | 1179.25 Gbp | 309.43x | 1.938 GB |
PacBio SubReads | 196.47 Gbp | 51.55x | 353.718 GB |
Coverage based on genome size 3.81 Gbp.
Last upload on 10 September 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Erpetoichthys_calabaricus/fErpCal1/genomic_data/pacbio/ . --exclude "*ccs*bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_curated from 5 March 2019
fErpCal1.pri.cur.20190305.fasta.gz (1 GB)
Version assembly_curated from 5 March 2019
fErpCal1.pri.cur.20190305.fasta.gz (1 GB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 76 | 3.60 Mbp | 1 | 332.46 Mbp |
20 | 205 | 2.33 Mbp | 2 | 309.31 Mbp |
30 | 378 | 1.86 Mbp | 3 | 293.87 Mbp |
40 | 592 | 1.47 Mbp | 5 | 209.93 Mbp |
50 | 867 | 1.14 Mbp | 6 | 199.23 Mbp |
60 | 1223 | 0.88 Mbp | 8 | 195.12 Mbp |
70 | 1697 | 0.64 Mbp | 11 | 163.43 Mbp |
80 | 2359 | 0.44 Mbp | 13 | 111.84 Mbp |
90 | 3441 | 0.24 Mbp | 17 | 88.37 Mbp |
100 | 7497 | 107 bp | 1883 | 3.04 Kbp |
1.000x | 7498 | 3.57 Gbp | 1884 | 3.81 Gbp |
NG based on genome size 3.81 Gbp.
Individual 1 Alternate Assembly
Version assembly_curated from 5 March 2019
fErpCal1.alt.cur.20190305.fasta.gz (765 MB)
Version assembly_curated from 5 March 2019
fErpCal1.alt.cur.20190305.fasta.gz (765 MB)
Contigs | Scaffolds | |||
---|---|---|---|---|
NG | LG | Len | LG | Len |
10 | 794 | 0.26 Mbp | 794 | 0.26 Mbp |
20 | 1981 | 0.19 Mbp | 1981 | 0.19 Mbp |
30 | 3517 | 0.15 Mbp | 3516 | 0.15 Mbp |
40 | 5430 | 0.12 Mbp | 5429 | 0.12 Mbp |
50 | 7806 | 98.42 Kbp | 7805 | 98.43 Kbp |
60 | 10774 | 78.54 Kbp | 10772 | 78.55 Kbp |
70 | 14498 | 62.18 Kbp | 14496 | 62.19 Kbp |
80 | 19295 | 47.38 Kbp | 19293 | 47.38 Kbp |
90 | 25876 | 32.52 Kbp | 25874 | 32.52 Kbp |
100 | 38597 | 142 bp | 38592 | 142 bp |
1.000x | 38598 | 2.61 Gbp | 38593 | 2.61 Gbp |
NG based on genome size 3.81 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 2 October 2019
fErpCal1.MT.20191002.fasta.gz (5 KB)
Version assembly_MT_rockefeller from 2 October 2019
fErpCal1.MT.20191002.fasta.gz (5 KB)
Data Use Policy
VGP samples and data come from a variety of sources. To support fair and productive use of this data,
please abide by the Data Use Policy
and contact us with any questions.