Geothlypis trichas

common yellowthroat


Information

Resource
NCBI Taxonomy Browser NCBI:txid135433

Resource Primary Assembly Alternate Assembly
GenBank GCA_009764595.1 GCA_009764545.1
ENA GCA_009764595.1 GCA_009764545.1
UCSC Genome Browser GCA_009764595.1 GCA_009764545.1

CC BY-SA 2.0 Dan Pancamo (flickr)

Raw Data

Datatype Approximate Coverage Download Size
10x34.05x28.521 GB
Arima94.50x65.322 GB
Bionano1362.71x2.877 GB
PacBio SubReads52.11x133.351 GB
Coverage based on genome size 1.44 Gbp.
Last upload on 3 October 2019.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/pacbio/ . --exclude "*ccs.bam*"

Assemblies

Individual 1 Primary Assembly
Version assembly_curated from 8 October 2019
bGeoTri1.pri.cur.20191008.fasta.gz (308 MB)

Contigs Scaffolds
NG LG Len LG Len
10 8 9.55 Mbp 0 153.09 Mbp
20 20 8.34 Mbp 1 116.84 Mbp
30 35 6.14 Mbp 2 114.14 Mbp
40 54 4.69 Mbp 3 77.06 Mbp
50 81 3.25 Mbp 5 72.54 Mbp
60 120 2.26 Mbp 6 63.30 Mbp
70 178 1.38 Mbp 9 31.78 Mbp
80 281 0.82 Mbp 13 20.83 Mbp
90 482 0.32 Mbp 19 14.38 Mbp
100 1756 3 bp 277 1.63 Kbp
1.000x 1757 1.06 Gbp 278 1.08 Gbp
Individual 1 Alternate Assembly
Version assembly_curated from 8 October 2019
bGeoTri1.alt.cur.20191008.fasta.gz (286 MB)

Contigs Scaffolds
NG LG Len LG Len
10 19 3.72 Mbp 19 3.72 Mbp
20 51 2.70 Mbp 51 2.70 Mbp
30 93 1.97 Mbp 93 1.97 Mbp
40 152 1.39 Mbp 152 1.39 Mbp
50 234 1.05 Mbp 234 1.05 Mbp
60 350 0.70 Mbp 350 0.70 Mbp
70 531 0.42 Mbp 531 0.42 Mbp
80 857 0.21 Mbp 857 0.21 Mbp
90 1640 71.36 Kbp 1639 71.62 Kbp
100 4976 564 bp 4975 564 bp
1.000x 4977 0.98 Gbp 4976 0.98 Gbp
NG based on genome size 1.44 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 16 December 2019
bGeoTri1.MT.20191216.fasta.gz (5 KB)

Data Use Policy

VGP samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact us with any questions.