Geothlypis trichas
common yellowthroat
Information
CC BY-SA 2.0 Dan Pancamo (flickr)
Raw Data
| Datatype | Approximate Coverage | Download Size |
|---|---|---|
| 10x | N/A | 28.521 GB |
| Arima | N/A | 65.322 GB |
| Bionano | N/A | 2.877 GB |
| PacBio Scraps | N/A | 384.234 GB |
| PacBio SubReads | N/A | 133.351 GB |
No genome size estimate available.
Last upload on 10 December 2018.
Download each datatype using the AWS Command Line Interface:
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/10x/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/arima/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/bionano/ .
aws s3 --no-sign-request sync s3://genomeark/species/Geothlypis_trichas/bGeoTri1/genomic_data/pacbio/ . --exclude "*scraps.bam* --exclude "*ccs.bam*"
Assemblies
Individual 1 Primary Assembly
Version assembly_vgp_standard_1.5 from 17 July 2019
bGeoTri1.pri.asm.20190717.fasta.gz (310 MB)
Version assembly_vgp_standard_1.5 from 17 July 2019
bGeoTri1.pri.asm.20190717.fasta.gz (310 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 8 | 9.55 Mbp | 0 | 143.27 Mbp |
| 20 | 20 | 8.34 Mbp | 1 | 112.37 Mbp |
| 30 | 35 | 6.14 Mbp | 2 | 94.71 Mbp |
| 40 | 54 | 4.69 Mbp | 4 | 70.71 Mbp |
| 50 | 81 | 3.25 Mbp | 5 | 68.24 Mbp |
| 60 | 120 | 2.26 Mbp | 8 | 31.96 Mbp |
| 70 | 179 | 1.31 Mbp | 12 | 20.88 Mbp |
| 80 | 283 | 0.82 Mbp | 18 | 16.10 Mbp |
| 90 | 484 | 0.32 Mbp | 29 | 5.78 Mbp |
| 100 | 1758 | 813 bp | 512 | 1.63 Kbp |
| 1.000x | 1759 | 1.07 Gbp | 513 | 1.10 Gbp |
Individual 1 Alternate Assembly
Version assembly_vgp_standard_1.5 from 17 July 2019
bGeoTri1.alt.asm.20190717.fasta.gz (285 MB)
Version assembly_vgp_standard_1.5 from 17 July 2019
bGeoTri1.alt.asm.20190717.fasta.gz (285 MB)
| Contigs | Scaffolds | |||
|---|---|---|---|---|
| NG | LG | Len | LG | Len |
| 10 | 19 | 3.72 Mbp | 19 | 3.72 Mbp |
| 20 | 51 | 2.70 Mbp | 51 | 2.70 Mbp |
| 30 | 93 | 1.97 Mbp | 93 | 1.97 Mbp |
| 40 | 152 | 1.39 Mbp | 152 | 1.39 Mbp |
| 50 | 233 | 1.05 Mbp | 233 | 1.05 Mbp |
| 60 | 348 | 0.70 Mbp | 348 | 0.70 Mbp |
| 70 | 529 | 0.42 Mbp | 529 | 0.42 Mbp |
| 80 | 852 | 0.21 Mbp | 852 | 0.21 Mbp |
| 90 | 1628 | 71.66 Kbp | 1628 | 71.66 Kbp |
| 100 | 4958 | 564 bp | 4958 | 564 bp |
| 1.000x | 4959 | 0.97 Gbp | 4959 | 0.97 Gbp |
NG based on each assembly size.
(No genome size estimate available.)
(No genome size estimate available.)
Data Use Policy
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please abide by the Data Use Policy
and contact us with any questions.